Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1139 | ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCTTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG | 657 | 51.9 | MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22185943 | 22186599 | - | CcPI632755_11g011390.1 | Cco11g1139 | 192375 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1139 | 218 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Cco11g1139 | 218 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 155 | - | - | |
Cco11g1139 | 218 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1487 | Cco-Chr1:26631782 | Cco11g1139 | Cco-Chr11:22185943 | 2.50E-41 | dispersed | |
Cco02g1441 | Cco-Chr2:26802056 | Cco11g1139 | Cco-Chr11:22185943 | 2.80E-45 | dispersed | |
Cco06g1928 | Cco-Chr6:29543816 | Cco11g1139 | Cco-Chr11:22185943 | 8.70E-47 | dispersed | |
Cco09g2049 | Cco-Chr9:34893718 | Cco11g1139 | Cco-Chr11:22185943 | 6.70E-25 | dispersed | |
Cco09g2134 | Cco-Chr9:35716222 | Cco11g1139 | Cco-Chr11:22185943 | 4.70E-44 | dispersed | |
Cco10g1573 | Cco-Chr10:28943397 | Cco11g1139 | Cco-Chr11:22185943 | 1.70E-23 | dispersed | |
Cco11g0593 | Cco-Chr11:6343251 | Cco11g1139 | Cco-Chr11:22185943 | 7.30E-35 | dispersed | |
Cco11g0618 | Cco-Chr11:6640944 | Cco11g1139 | Cco-Chr11:22185943 | 1.50E-37 | dispersed | |
Cco11g1139 | Cco-Chr11:22185943 | Cco10g1378 | Cco-Chr10:26834204 | 6.70E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60273 | PF03195 | LOB | 4.10E-43 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1139 | - | - | - | 0.0 |