Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1139 ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCTTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 51.9 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22185943 22186599 - CcPI632755_11g011390.1 Cco11g1139 192375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1139 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cco11g1139 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
Cco11g1139 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1487 Cco-Chr1:26631782 Cco11g1139 Cco-Chr11:22185943 2.50E-41 dispersed
Cco02g1441 Cco-Chr2:26802056 Cco11g1139 Cco-Chr11:22185943 2.80E-45 dispersed
Cco06g1928 Cco-Chr6:29543816 Cco11g1139 Cco-Chr11:22185943 8.70E-47 dispersed
Cco09g2049 Cco-Chr9:34893718 Cco11g1139 Cco-Chr11:22185943 6.70E-25 dispersed
Cco09g2134 Cco-Chr9:35716222 Cco11g1139 Cco-Chr11:22185943 4.70E-44 dispersed
Cco10g1573 Cco-Chr10:28943397 Cco11g1139 Cco-Chr11:22185943 1.70E-23 dispersed
Cco11g0593 Cco-Chr11:6343251 Cco11g1139 Cco-Chr11:22185943 7.30E-35 dispersed
Cco11g0618 Cco-Chr11:6640944 Cco11g1139 Cco-Chr11:22185943 1.50E-37 dispersed
Cco11g1139 Cco-Chr11:22185943 Cco10g1378 Cco-Chr10:26834204 6.70E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60273 PF03195 LOB 4.10E-43 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1139 - - - 0.0