Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1147 CTTGACACATCGGAATCGCCACGCTTTGACCTCCTGATCGAGATTCTATTAGACGGCTGTGAACCTAGCATCGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTCTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGCATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAACATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGAGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGACGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCAGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACGGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1245 47.31 LDTSESPRFDLLIEILLDGCEPSIGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22402226 22410694 + CcPI632755_11g011470.1 Cco11g1147 192383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1147 414 SUPERFAMILY Protein kinase-like (PK-like) 118 387 IPR011009 -
Cco11g1147 414 CDD STKc_MAP3K-like 140 387 - -
Cco11g1147 414 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 PRINTS Tyrosine kinase catalytic domain signature 295 305 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 Pfam Protein tyrosine and serine/threonine kinase 134 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 FunFam Serine/threonine-protein kinase isoform 1 123 215 - -
Cco11g1147 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 Gene3D Transferase(Phosphotransferase) domain 1 216 409 - -
Cco11g1147 414 Gene3D Phosphorylase Kinase; domain 1 122 215 - -
Cco11g1147 414 PANTHER SERINE-THREONINE PROTEIN KINASE 81 389 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco11g1147 414 ProSiteProfiles Protein kinase domain profile. 133 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 SMART serkin_6 133 395 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1147 414 FunFam serine/threonine-protein kinase HT1 216 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2089 Cco-Chr4:34819877 Cco11g1147 Cco-Chr11:22402226 5.10E-78 dispersed
Cco05g0143 Cco-Chr5:1145981 Cco11g1147 Cco-Chr11:22402226 5.90E-24 dispersed
Cco06g1942 Cco-Chr6:29656891 Cco11g1147 Cco-Chr11:22402226 2.80E-61 dispersed
Cco10g0042 Cco-Chr10:473834 Cco11g1147 Cco-Chr11:22402226 2.70E-70 dispersed
Cco10g1412 Cco-Chr10:27205296 Cco11g1147 Cco-Chr11:22402226 3.70E-60 dispersed
Cco10g1622 Cco-Chr10:29583316 Cco11g1147 Cco-Chr11:22402226 8.20E-31 dispersed
Cco10g1925 Cco-Chr10:32842805 Cco11g1147 Cco-Chr11:22402226 2.10E-45 dispersed
Cco10g2256 Cco-Chr10:35461495 Cco11g1147 Cco-Chr11:22402226 1.30E-64 dispersed
Cco11g1147 Cco-Chr11:22402226 Cco11g1512 Cco-Chr11:27937166 3.80E-42 dispersed
Cco11g1147 Cco-Chr11:22402226 Cco04g1941 Cco-Chr4:33738205 1.10E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87240 PF07714 PK_Tyr_Ser-Thr 2.90E-65 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1147 - - - 0.0