Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1154 ATGGCCAAAACTGAAGGCAAAGCCATTGGCATCGACCTTGGCACCACCTACAGCTGTGTCGGGGTTTGGCTCAACGATCGTGTTGAAATTATCCCCAATGATCAAGGTAACCGAACCACTCCTTCTTATGTAGCTTTCACCGACACTGAGCGTTTGATCGGCGATGCGGCTAAGAATCAGGTCGCTATGAATCCTCAGAATACCGTCTTCGACGCCAAGCGATTGATCGGCCGACGACTCTCTGATCCCTCTGTTCAGAGCGATATGAAGCTTTGGCCATTCAAAGTGGTGGCTGGACCTGGAGACAAGCCGATGATTATTGTTAATTACAAAGGTGAAGAGAAGCAGTTTGCTCCGGAGGAGATCTCTTCTATGGTTTTGACTAAGATGAAAGAAATCGCGGAAGCTTTTCTGGGGCAAACTATCAAGAACGCGGTAATTACAGTCCCTGCTTATTTCAACGATTCACAGAGACAAGCGACGAAAGATGCAGGTGCTATTGCTGGACTCAACGTGATGCGTATCATCAACGAGCCAACGGCGGCTGCGATTGCGTATGGTCTGGACAAAAAGGCGTCTCGTAGAGGTGAACAGAACGTGCTGATCTTCGACCTCGGCGGTGGAACTTTCGATGTGTCGCTCTTGACAATAGAAGAGGGAATTTTCGAGGTCAAAGCCACTGCCGGCGATACTCATCTCGGCGGTGAAGATTTTGACAACAGACTCGTAAATCACTTCGTTACAGAATTCAAACGCAAGAACAAGAAAGATATCAGCGGCAATGCAAGGGCGTTGAGGAGGTTGAGGACGGCCTGTGAACGAGCGAAAAGAGCCCTATCATCGACGACGCAAACGACGATTGAAGTTGATTCCCTTTACGAAGGGATTGATTTCTATGCGACAATAACTAGGGCTAGATTTGAGGAACTGTGTATGGATATGTTCATGAAGTGCATGGAGCCTGTGGAGAAATGTATCCGAGATGCTAAAATTGATAAAAGCCAAGTTCATGAGGTGGTTTTGGTTGGTGGATCCACAAGAATTCCGAAAGTTCAGCAGCTTCTCCAAGATTACTTCAACGGAAAGGAGCTGTGCAAAAGTATCAACCCGGATGAGGCCGTTGCATATGGTGCTGCTGTTCAGGCTGCAATTCTAAGTGGGGAAGGAGACGAGAAGGTTCAAGATCTTCTACTCCTGGACGTCACACCTCTGAGTCTGGGTCTAGAGACGGCGGGCGGGGTGATGACGGTTCTAATTCCAAGGAACACAACAATCCCGACAAAGAAAGAACAAATATTCTCAACATACTCAGACAACCAACCGGGGGTTTTAATCCAAGTATACGAAGGAGAGCGAGCAAGAACCAAAGACAACAACCTACTGGGAAAATTCGAGCTCACCGGCATTCCTCCAGCACCAAGAGGCGTCCCGCAGATCAATGTGGTGTTCGACATCGATGCCAACGGCATCCTAAACGTATCGGCAGAGGACAAAACTGCAGGAGTAAAGAACAAGATCACAATTACCAACGACAAGGGGAGAATGAGCAAAGACGAGATAGAGAGGCTGGTGAAAGAAGCAGAGAAGTACAAAGCAGAAGATGAGGAAGTGAAGAAGAAAGTTGAGGCTAAGAATGCATTGGAGAATTACGCGTATAATATGAGGAATACTGTTAGGGATGAGAAATTTGCGGGGAAACTGAATCCAGAAGATAAGCAGAAGATTGAGAAATCTGTTGAAGATACAATTGAGTGGTTGGATAGGAACCAACTGGCGGAGGTTGATGAGCTTGAAGATAAGCTGAAGGAGCTTGAGGGTATCTGTAATCCCATCATTTCCAAGATGTATCAGGGCGGTGCTCCCATGGGCGATGATATGCCTGGTGGCGGCTCCGCCCCGTCCGGTGGTGCTGGGCCGAAGATTGAGGAGCAAAAGCGATATTCATTAGGCCAAGATACCTCAAGTAAAAGCTTTGATGGCTGGTTGACCAAAATGAGGATCTCAAAAGCCATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAACCGTTGAAGAATTTGGACGGTCAAGTTTGTGAGATCTGTGGTGACGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCGAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGACGAAGAAAATGCACAATACGGAAGAACACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGGAGTACAAGATGGGATGAAAAGAAAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGATTGATGCAGCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCGTACCGGATGGTTATTGTAGCCCGGCTCGTTATTCTCGCCTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGACGCATTGGGCTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCGGTCGACATCTTTGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGACAAGATTTCATGCTATGTTTCGGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCGAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCGACATTTGTGAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCAGCAGAAGGATGGATAATGCAAGATGGAACACCGTGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGAAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACGAATGCTCCATTCATGTTGAACCTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTCAAGCACTCTAAAAGTGGGGTAGATGGAGATGTTGCAGTGCTGGAAGATGATAAGGAGCTACTGATGTCACAAATGAATTTTGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGTGGTGTTCCGCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCGTTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCCGTTTGGTATGGTCATAAGGGCGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTAAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTAGTACAAGGTCTATTGAAGGTATTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACGGATGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTAGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAACGGGTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCAGACAAAACCGTACACCAACTATAGTCGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGACCTGATACTAAGAAATGTGGACTAAATTGCTGA 5109 45.49 MAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFKVVAGPGDKPMIIVNYKGEEKQFAPEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVVFDIDANGILNVSAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPEDKQKIEKSVEDTIEWLDRNQLAEVDELEDKLKELEGICNPIISKMYQGGAPMGDDMPGGGSAPSGGAGPKIEEQKRYSLGQDTSSKSFDGWLTKMRISKAMEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRTQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSTRWDEKKEEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKHSKSGVDGDVAVLEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGHKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22565194 22574743 - CcPI632755_11g011540.1 Cco11g1154 192390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1154 1702 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Cco11g1154 1702 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 903 1671 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cco11g1154 1702 FunFam Heat shock protein 70 9 195 - -
Cco11g1154 1702 MobiDBLite consensus disorder prediction 618 641 - -
Cco11g1154 1702 Gene3D - 9 383 - -
Cco11g1154 1702 CDD HSPA1-2_6-8-like_NBD 8 386 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 57 65 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 7 20 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 35 47 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 395 414 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 208 218 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 476 492 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 145 165 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 336 352 - -
Cco11g1154 1702 PRINTS 70kDa heat shock protein signature 368 388 - -
Cco11g1154 1702 FunFam Heat shock 70 kDa protein 196 263 - -
Cco11g1154 1702 Coils Coil 265 285 - -
Cco11g1154 1702 Coils Coil 513 544 - -
Cco11g1154 1702 Gene3D - 70 125 - -
Cco11g1154 1702 ProSiteProfiles Zinc finger RING-type profile. 707 753 IPR001841 -
Cco11g1154 1702 Pfam Cellulose synthase 997 1696 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cco11g1154 1702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1010 1526 IPR029044 -
Cco11g1154 1702 SUPERFAMILY RING/U-box 691 777 - -
Cco11g1154 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 779 IPR013083 -
Cco11g1154 1702 FunFam Heat shock protein 70 545 618 - -
Cco11g1154 1702 Pfam Zinc-binding RING-finger 697 773 IPR027934 -
Cco11g1154 1702 Gene3D Actin; Chain A, domain 4 234 317 - -
Cco11g1154 1702 FunFam Cellulose synthase 689 780 - -
Cco11g1154 1702 Gene3D - 191 365 - -
Cco11g1154 1702 CDD mRING-HC-C4C4_CesA 705 755 - -
Cco11g1154 1702 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cco11g1154 1702 Coils Coil 587 607 - -
Cco11g1154 1702 FunFam Heat shock 70 kDa 390 544 - -
Cco11g1154 1702 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 391 548 IPR029047 -
Cco11g1154 1702 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Cco11g1154 1702 SUPERFAMILY Actin-like ATPase domain 196 387 IPR043129 -
Cco11g1154 1702 Gene3D - 544 618 IPR029048 -
Cco11g1154 1702 FunFam Cellulose synthase 1114 1288 - -
Cco11g1154 1702 FunFam Heat shock 70 kDa 234 317 - -
Cco11g1154 1702 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Cco11g1154 1702 FunFam Heat shock cognate 70 kDa protein 2 318 365 - -
Cco11g1154 1702 FunFam Heat shock 70 kDa protein 70 125 - -
Cco11g1154 1702 Pfam Hsp70 protein 8 617 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cco11g1154 1702 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 622 IPR029048 -
Cco11g1154 1702 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 390 543 IPR029047 -
Cco11g1154 1702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1102 1288 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0183 Cco-Chr1:1768804 Cco11g1154 Cco-Chr11:22565194 2.10E-231 dispersed
Cco02g0989 Cco-Chr2:12356534 Cco11g1154 Cco-Chr11:22565194 3.40E-118 dispersed
Cco02g0990 Cco-Chr2:12419377 Cco11g1154 Cco-Chr11:22565194 2.80E-112 dispersed
Cco06g0146 Cco-Chr6:1492988 Cco11g1154 Cco-Chr11:22565194 0.00E+00 dispersed
Cco08g0285 Cco-Chr8:5178292 Cco11g1154 Cco-Chr11:22565194 0.00E+00 dispersed
Cco09g0397 Cco-Chr9:3610243 Cco11g1154 Cco-Chr11:22565194 0.00E+00 dispersed
Cco09g2197 Cco-Chr9:36295047 Cco11g1154 Cco-Chr11:22565194 0.00E+00 dispersed
Cco09g2341 Cco-Chr9:37590001 Cco11g1154 Cco-Chr11:22565194 2.40E-108 dispersed
Cco09g2342 Cco-Chr9:37596872 Cco11g1154 Cco-Chr11:22565194 2.30E-106 dispersed
Cco10g0954 Cco-Chr10:20739044 Cco11g1154 Cco-Chr11:22565194 2.60E-157 dispersed
Cco10g1101 Cco-Chr10:23307788 Cco11g1154 Cco-Chr11:22565194 4.00E-246 dispersed
Cco10g1102 Cco-Chr10:23320945 Cco11g1154 Cco-Chr11:22565194 8.80E-83 dispersed
Cco10g1103 Cco-Chr10:23323144 Cco11g1154 Cco-Chr11:22565194 4.20E-95 dispersed
Cco11g1154 Cco-Chr11:22565194 Cco11g1724 Cco-Chr11:30072804 8.60E-56 dispersed
Cco11g1154 Cco-Chr11:22565194 Cco09g2190 Cco-Chr9:36255452 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1154 K10999 - csv:101214842 2081.6