Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1155 ATGGCAAAAGGAGGAGCTCAGAAGAAAGATGTGGCGGTGGCGATCGACAAAGACAAATGTAGTCAGCAAGCTTTGAAATGGACAATCGAACGCCTTCTTAGCAGAGGCCAAGTGGTTACTCTGCTTCATGTTAAGCAGAAACCGTCTTCCTCTGCACATTCGATGACGAATATGAGTGCGGATTCGAATGTGGATGAGGCCGGTTTGTATAAACAACAGCTTGATAGTCATGCCAGAGATCAGTTCTTCCTCCCTTTTCGTTGCATTTGCACAAGAAACAATATACCATGCAATGAGGTGATGTTGGATGAAGGAGAGGTTCCAAAGACATTAATAAATTATGTCTCCAAAAATGTTATAGACATTTTAGTACTTGGTGCCCCTACAAGATCAATTTACAAGAGATTCAAGTCAGATGTTCCAAGCAGTGTATCAAAAGGAGCACCAGACTTCTGCACTGTTTACACTATTGGCAACAAAGGCAAGGTTTCAGTGAGACAATCCACAGCTCCACCGCCAGCAAAGCCCGTTGCTCCGCCACGCACCCAACTGCAGCCCGCCCCACCCCGCCCTCAGCTGCTACATCAGCTCACCAATGCCTCGGAAGTTGCGGCCGAGCCGAACCAGCCACGCTCCCAAGCAGCTAAATCTTTAGATACTCAAAACAGCATAAATACTCCTCCTCGTGCCGTTCAAGAAGATTGGGACATCAAGTCACCATTTACAAGGCCAGGTTCAAGGGCTTCAATGAGCAAAGTGATGGAACCATTGACGGCGGATTCCGACATATCGTACGTCAGCAGCGGGAGGCGGAGCGTAGACCGTGGCTTCCAAGGGGCGTGGAACTCCAGCACTTGCACCGACTCGTATCGCCTTTCTAACGTCTCTGAGTTTGAAGTTTCCAGCCCCGGTCCGGCTTCGCCTATGCTGGAAATGGGAGGAGGAACCAACAAATCATCCATTGATAATACTATCAATGATGATGATGATAATAATAACAACAACAATAGCAATGTCTCTTCTTACCCTCAAGATATGTCATTTTGCTCTTTACAAAGTGAAACATTCTCTTGGCCTTCCAATTCTCACGCTCAGGATGATGTTGAAGCTGAGATGAGAAGACTGAAATTAGAGCTCAAACAAACCATGGACATGTACAGTACAGCCTGCAGAGAAGCCCTAAACGCCAAGCAGAAGGCGATGGAGCTCCATCGCTGGAAAGTTGAAGAAGAGCAAAGGTTAGAAGAGGCGAGAATGGGGGGAGAAGCAGCATTAGCAATGGCGGAGAAGGAGAAGATGAAATGCAAAGCAGCGATGGAGGCAGCTGAAGCTGCACAAAAGATCGCAGTACTTGAGGCGAGGAAAAGAGCGAACGCGGAGAAAATGGTGGACATGGAAGCACAAGAAACGAAAAGAACACTTTCGCTTTCAGGATTCGGCCATGGAGAAATCGGTTACAGAAGGTACACAATCCAGGAAATCAAAACTGCCACGAAAGGCTTCTCTGATTCTCTAAAGATCGGTGAAGGTGGTTACGGTCCAGTCTTCCGTGGAGAACTTGACCACACACCGGTGGCGATCAAGGTTCTCCGGCCGGATGCTGCTCACGGACGATCACAATTTCAGCAAGAGGTTGAAGTTCTAAGTTGTATTCGTCATCCAAACATGGTTCTCCTTCTTGGAGCGTGTCCTGAAAACGGTTGTTTGGTTTACGAATTCATGGCGAATGGAAGCTTAGAAGACTGTCTCTTTCGAAAAGCGAACGATCCAATTCTTTCGTGGCAGTTACGATTCCGAATCGCGGCGGAGATCGCAACCGGACTTCTCTTCCTACACCAGACCAGACCAGAACCGATTGTACACCGCGATCTGAAACCAGGGAACATTTTGCTAGATAGGAACTACGTGAGCAAAATCAGTGACGTCGGACTGGCGAGGCTGGTTCCTCCATCAGTGGCCGATTCAGTGACTCAATATCGGATGACAGCAACGGCAGGGACATTCTTCTACATCGATCCAGAGTATCAGCAAACAGGATTGCTAGGGATTAAATCGGACATTTACTCGTTGGGCGTGATGCTTCTGCAAATAATCACAGCCAGGCCCCCAATCGGACTAGCGCACGCTGTCGAAAGGGCGATTGAGAAGGGGACATTTGCAGAGATGCTTGATCCAGATGTGAAGGACTGGCCAGTTGAAGACGCGTTGAAGTTTGCGAAACTTTCAATTAAGTGCGCAGAAATGAGGAAGAGAGATCGACCAGATCTTGGGAAGGTGGTGCTGCCGGAGCTTAATCGGTTGAGAACAATGGCGGAGGAGAGTATGGGACTTCGGTCGTTCAACGGTTGTAGTACGTGTTCATCGCCATATGCAAGCCAAACTTCTCAGGAAATGATAAGTAGTGTAAATCTGGAGCATTGTGGAGCATGGGTTGAGAGCTCAAGCAGCCAATCAGATAGCAGCATGTCATCATACTCAGGCAAAAGACCTTATTGGCTGGACTAG 2505 48.02 MAKGGAQKKDVAVAIDKDKCSQQALKWTIERLLSRGQVVTLLHVKQKPSSSAHSMTNMSADSNVDEAGLYKQQLDSHARDQFFLPFRCICTRNNIPCNEVMLDEGEVPKTLINYVSKNVIDILVLGAPTRSIYKRFKSDVPSSVSKGAPDFCTVYTIGNKGKVSVRQSTAPPPAKPVAPPRTQLQPAPPRPQLLHQLTNASEVAAEPNQPRSQAAKSLDTQNSINTPPRAVQEDWDIKSPFTRPGSRASMSKVMEPLTADSDISYVSSGRRSVDRGFQGAWNSSTCTDSYRLSNVSEFEVSSPGPASPMLEMGGGTNKSSIDNTINDDDDNNNNNNSNVSSYPQDMSFCSLQSETFSWPSNSHAQDDVEAEMRRLKLELKQTMDMYSTACREALNAKQKAMELHRWKVEEEQRLEEARMGGEAALAMAEKEKMKCKAAMEAAEAAQKIAVLEARKRANAEKMVDMEAQETKRTLSLSGFGHGEIGYRRYTIQEIKTATKGFSDSLKIGEGGYGPVFRGELDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKANDPILSWQLRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITARPPIGLAHAVERAIEKGTFAEMLDPDVKDWPVEDALKFAKLSIKCAEMRKRDRPDLGKVVLPELNRLRTMAEESMGLRSFNGCSTCSSPYASQTSQEMISSVNLEHCGAWVESSSSQSDSSMSSYSGKRPYWLD 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22585727 22592464 + CcPI632755_11g011550.1 Cco11g1155 192391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1155 834 FunFam U-box domain-containing protein 51 574 774 - -
Cco11g1155 834 Coils Coil 425 445 - -
Cco11g1155 834 ProSiteProfiles Protein kinase domain profile. 501 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1155 834 SMART serkin_6 501 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1155 834 MobiDBLite consensus disorder prediction 192 229 - -
Cco11g1155 834 MobiDBLite consensus disorder prediction 172 187 - -
Cco11g1155 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1155 834 Pfam Protein kinase domain 504 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1155 834 Gene3D Phosphorylase Kinase; domain 1 483 573 - -
Cco11g1155 834 Coils Coil 365 385 - -
Cco11g1155 834 CDD STK_N 11 161 - -
Cco11g1155 834 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 573 - -
Cco11g1155 834 PANTHER OS02G0152300 PROTEIN 11 797 IPR051348 -
Cco11g1155 834 MobiDBLite consensus disorder prediction 313 344 - -
Cco11g1155 834 Gene3D Transferase(Phosphotransferase) domain 1 574 780 - -
Cco11g1155 834 Pfam Universal stress protein family 10 136 IPR006016 -
Cco11g1155 834 Gene3D HUPs 9 157 IPR014729 -
Cco11g1155 834 MobiDBLite consensus disorder prediction 163 232 - -
Cco11g1155 834 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 137 - -
Cco11g1155 834 MobiDBLite consensus disorder prediction 298 344 - -
Cco11g1155 834 SUPERFAMILY Protein kinase-like (PK-like) 480 760 IPR011009 -
Cco11g1155 834 MobiDBLite consensus disorder prediction 814 834 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2905 Cco-Chr5:36584538 Cco11g1155 Cco-Chr11:22585727 3.60E-219 dispersed
Cco09g0075 Cco-Chr9:649760 Cco11g1155 Cco-Chr11:22585727 3.20E-154 dispersed
Cco11g0188 Cco-Chr11:1845996 Cco11g1155 Cco-Chr11:22585727 1.10E-100 dispersed
Cco11g1155 Cco-Chr11:22585727 Cco03g0003 Cco-Chr3:48484 1.20E-50 dispersed
Cco11g1155 Cco-Chr11:22585727 Cco08g1414 Cco-Chr8:26072767 2.30E-216 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87242 PF07714 PK_Tyr_Ser-Thr 5.00E-37 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1155 - - - 0.0