Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g1168 | ATGGCTTCCAAAGCCTTCTTTTCTCTCTTTTCAATGCTTCTTGTTTCTCTTGTTACTAAATTCATATTCCCCATGTCTCCACTTGCTTTCGGAGTCACAATCTTCATTGCTCCTCTCTTTACTTATATCATCTCTTCCATGGCCTTCTCCTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGCAATGATCTCAACCATCGCCTTCTTGCTTCCTTGTGCAAGAGATTTGGCTCCATATTCCTCTTAAAGCTCGGCTCCAAGAACCTCGTTGTTGTGTCTGATGCCGAGCTTGCTAGCCAAGTTCTCCATGCTCAAGGTGTCGAGTTTGGCTCTCGCCCTCGAAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAAGATATGGTGTTTACCGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACATTGCCGTTTTTTACAAACAAAGTGGTGCACAGCTACAGTGACATGTGGGAAGATGAGATGGACTCTGTGGTTCGTGACCTTAAGAGTAACAAGAAGTTTCAATCAGAAGGGATAGTCATTAGAAAGCGTTTGCAATTGATGTTGTACAATATCATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGACGATCCTTTGTTCATTGAAGCAACCCGATTCAACTCAGAAAGGAGTCGATTGGCACAAAGCTTTGAGTACAACTACGGAGATTTCATTCCTTTGCTCAGACCTTTCTTGCGAGGTTACTTGAACAAGTGTAGAGATTTGCAGAGTAGGAGGTTGAACTTTTTCAACAAAAACTATGTTGAGAAAAGAAGGAAGATAATGGCTGGGAATGGAGATAAGCACAAGATAAGTTGCGCCATGGATCATATTATAGACGCTCAATTGAAAGGTGAGATAAGTGAAGAGAATGTGATTTACATCGTGGAGAACATCAATGTGGCTGCTATCGAAACGACATTGTGGTCAATGGAATGGGCGATAGCTGAGCTGGTGAATCATCCAAAAATCCAACACAAGATTCGGGAGGAGATTAGTAATGTCCTAAAAGGAAAGGAAGTGACTGAATCTAACCTTCATGAACTACCATACTTGCAAGCAACAGTAAAAGAAACACTAAGGTTGCACACTCCAATTCCATTGTTGGTGCCACATATGAACTTGGAAGAGGCAAAGCTCGGAGGGTACACCATTCCAAAAGAATCTAAGGTGGTAGTGAATGCATGGTGGCTGGCTAATAACCCTGAGTGGTGGAAAAATCCAGAGGAGTTCAGACCAGAGAGGTTCTTTGAAGAAGAAAGTGGAACAGAGGCTGTTGCTGTAGGAAAAGTAGATTATCGATTCTTACCATTTGGAGTTGGAAGAAGGAGTTGCCCTGGAATTGTTTTGGCAATGCCAATCTTAGGACTCATTGTTGCCAAGTTGGTTTCAAAGTTTGAAATGAAACCACCTAATGGATTAGAGAAGATTGATGTCGCAGAAAAAGGAGGACAATTCAGTCTGCATATCGCCAACCACTCAACGGTTGCCATCGATCAAGCCACGAGTTGGATTGAGTCATCCACGTCGCTATCAGTGTACAAGCCAAACCATCTATTGTCGCGCGTTGAGGTTCAATTTTTGGTCGCTGCTATGGGTTCGCTACCGCTAGCGTTGATGGTCTCCAAAATCTCTATTTTTGGGAATTTAGACTTCGTCAGTGTGCTGTTCGTGGAATTTGGAAGCGGTTTTAGCAAGATTTTGGTGACTTTTGGCATTTTGAGCCCTTTTGGATTAAAGAGTTACCATCCTGATCATTCTTACTTCAATCCCACCCCCTTTTACATTCCTTCACCTATTTCCCATGTGCAAACCTTTTCTTTCCCTGTTCCTACTTCTTCCCATCATTCAACTCCTCCTTTTCCTCCTGGTTTTCCCTCTCCCCCTTCTAAACAATCTTCTTTTTCATCTATATCACCACATACTGTTTCTCCACCTTCTGACTCCCCCTTTTGCTCTACTACAGTTCATTGTCCTGCTGCACAGACTGATATGGTATCTACACCCACTGTGTCTTATTCCCCTGCCTCAAGTGTTAACTCTCTTGTTCAACAACTAGCTTTACCCAGTCCTTTCACTTCCATTATACCTCAATCCACAAATATTCACCCCATGATCACTCGGTCAAAAGGTGGGATTGTTAAACCTCGAGTCTGGCATGCTCAATCCAAAATTCAAATCTCTATTTCCACAGAACCAACCAGCTTTCGCCATGCGCTCATTTTTGCCGTCTTCGTTCCAAGTTCACAGTTCAGAGTCATGTTTTGCTTGAGGGGGATGAAAGTTGATGTTTATTCCGGGATGAAAGTTGATGTTTATTCTTGGGCTATTTTCCCTTATTGCTGCATTTCCTTTTCTGTTATTTCTTTTCCTATGAGGCTACTCCACATGTCCTTCTTGTGTTCTTTACATTCGACATTCTCCTTCAATAGTATTCACTAA | 2511 | 42.57 | MASKAFFSLFSMLLVSLVTKFIFPMSPLAFGVTIFIAPLFTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHSYSDMWEDEMDSVVRDLKSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLNFFNKNYVEKRRKIMAGNGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPKIQHKIREEISNVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAVGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPNGLEKIDVAEKGGQFSLHIANHSTVAIDQATSWIESSTSLSVYKPNHLLSRVEVQFLVAAMGSLPLALMVSKISIFGNLDFVSVLFVEFGSGFSKILVTFGILSPFGLKSYHPDHSYFNPTPFYIPSPISHVQTFSFPVPTSSHHSTPPFPPGFPSPPSKQSSFSSISPHTVSPPSDSPFCSTTVHCPAAQTDMVSTPTVSYSPASSVNSLVQQLALPSPFTSIIPQSTNIHPMITRSKGGIVKPRVWHAQSKIQISISTEPTSFRHALIFAVFVPSSQFRVMFCLRGMKVDVYSGMKVDVYSWAIFPYCCISFSVISFPMRLLHMSFLCSLHSTFSFNSIH | 836 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 22784133 | 22791306 | + | CcPI632755_11g011680.1 | Cco11g1168 | 192404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g1168 | 836 | FunFam | Trans-cinnamate 4-monooxygenase | 44 | 518 | - | - | |
| Cco11g1168 | 836 | MobiDBLite | consensus disorder prediction | 638 | 652 | - | - | |
| Cco11g1168 | 836 | Gene3D | Cytochrome P450 | 48 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | Pfam | Cytochrome P450 | 54 | 514 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco11g1168 | 836 | MobiDBLite | consensus disorder prediction | 653 | 671 | - | - | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 417 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 106 | 127 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 82 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | E-class P450 group I signature | 376 | 394 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g1168 | 836 | MobiDBLite | consensus disorder prediction | 637 | 671 | - | - | |
| Cco11g1168 | 836 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 34 | 523 | - | GO:0004497(PANTHER) | |
| Cco11g1168 | 836 | SUPERFAMILY | Cytochrome P450 | 54 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0007 | Cco-Chr3:99997 | Cco11g1168 | Cco-Chr11:22784133 | 1.90E-181 | dispersed | |
| Cco11g1168 | Cco-Chr11:22784133 | Cco11g1170 | Cco-Chr11:22798840 | 4.10E-253 | dispersed | |
| Cco11g1167 | Cco-Chr11:22774163 | Cco11g1168 | Cco-Chr11:22784133 | 5.90E-280 | tandem | |
| Cco11g1168 | Cco-Chr11:22784133 | Cco11g1169 | Cco-Chr11:22792976 | 1.50E-93 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g1168 | K00487 | - | csv:101205537 | 992.645 |