Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1170 ATGGGGCATTCTGCAGAAAAGTTTGGTTTCCTTTGCTCAGTCTCTTCACTAGCTTTGGGGTTGATCACCAAGTTCATTTTCCCCAGTTTATTCTTGTCCATTTCCCCAAACATCCTTCCAATCACTCTTTCCATTGCAGTTGTTTTTGCTTTCCCCTTCTTTGGCTTATCCAATTTCTCCAAAAATCCTCCAGGTCCTCTCCCTATTCCCATCTTTGGGAATTGGCTCCAAGTTGGCAATGATCTCAACCATCGCCTTCTTGCTTCTTTGTCACAAAAATACGGTTCTGTCTTCCGACTCAAACTTGGTTACAAGAATCTAGTTGTGGTGTCTGATGCCGAGCTTGCTAACCAAGTCCTCCATGCTCAAGGTGTGGAGTTTGGATCTCGTCCACGAAATGTTGTCTTTGACATTTTCACTGGTAATGGACAAGATATGGTGTTCACCGTTTATGGCAACCATTGGCGTAAAATGCGTAGAATTATGACACTGCCGTTTTTTACAAACAAAGTTGTGCATAACTACAGTGGCATGTGGGAGGAAGAAATGGATTTAGTTGTTCATGATCTTATGAATAACCCAAAGGTAAAATCTGAAGGGTTAGTCATAAGAAAGCGTTTACAACTGATGTTGTACAATATCATGTATAGAATGATGTTTGATACTAAATTTGAATCTCAAGATGATCCTTTGTTTATTGAGGCAACTAAATTCAATTCTGAAAGAAGTCGATTGGCACAAAGTTTTGAATACAATTATGGAGATTTCATTCCTCTGCTTAGACCGTTTTTGAGGAGTTACTTGAACAAATGCAAGGATTTGCAAAGCAGGAGGTTGGCATTTTTCAACAATAACTATGTTGAGAAAAGAAGAAAAATTATGGCTGCCAATGGAGACAAGCACAGGATAAGTTGTGCTATGGATCATATTATAGATGCTCAGCTAAAAGGAGAAATTAGTGAAGAGAATGTGATATACATTGTGGAAAATATTAATGTTGCAGCAATAGAGACGACACTTTGGTCGATGGAGTGGGCAATAGCTGAGTTGGTAAACCATCCAACTGTACAACGAAATATCCGAGAGGGAATCTCAACCATCCTAAAAGGAAAGGAAGTCACAGAATCTAACTTACATGAGCTGCCATATCTGCAAGCCACAGTGAAAGAGACATTGAGACTGCACACACCAATACCTTTATTAGTTCCACATATGAACTTGGAAGAAGCCAAGCTTGGAGGCTACACAATTCCAAAAGAGTCTAAGGTGGTGGTAAATGCATGGTGGTTGGCCAATAACCCAGCATGGTGGAAAAATCCAGAGGAATTCAGGCCAGAGAGGTTCCTTCAAGAAGAAAGTAGCACAGAAGCTGTAGCAGGAGGCAAAGTTGACTTCCGATTCTTACCATTTGGTGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCGCTGCCAATCTTGGGATTGATCATTGCTAAGTTGGTGACAAATTTTGAAATGAAGCCTCCAATTGGCATGGAGAAGATTGATGTGAGCGAAAAAGGAGGACAATTCAGTTTACATATTGCCAACCACTCAACTGTGGCATTCAAACCTATAACTGCTTAG 1608 40.55 MGHSAEKFGFLCSVSSLALGLITKFIFPSLFLSISPNILPITLSIAVVFAFPFFGLSNFSKNPPGPLPIPIFGNWLQVGNDLNHRLLASLSQKYGSVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGNHWRKMRRIMTLPFFTNKVVHNYSGMWEEEMDLVVHDLMNNPKVKSEGLVIRKRLQLMLYNIMYRMMFDTKFESQDDPLFIEATKFNSERSRLAQSFEYNYGDFIPLLRPFLRSYLNKCKDLQSRRLAFFNNNYVEKRRKIMAANGDKHRISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPTVQRNIREGISTILKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFLQEESSTEAVAGGKVDFRFLPFGVGRRSCPGIVLALPILGLIIAKLVTNFEMKPPIGMEKIDVSEKGGQFSLHIANHSTVAFKPITA 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22798840 22800524 + CcPI632755_11g011700.1 Cco11g1170 192406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1170 535 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 56 534 - GO:0004497(PANTHER)
Cco11g1170 535 FunFam Trans-cinnamate 4-monooxygenase 56 527 - -
Cco11g1170 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco11g1170 535 SUPERFAMILY Cytochrome P450 63 515 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 Gene3D Cytochrome P450 57 528 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1170 535 Pfam Cytochrome P450 63 523 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2032 Cco-Chr2:33302515 Cco11g1170 Cco-Chr11:22798840 3.80E-193 dispersed
Cco11g1167 Cco-Chr11:22774163 Cco11g1170 Cco-Chr11:22798840 1.70E-242 dispersed
Cco11g1168 Cco-Chr11:22784133 Cco11g1170 Cco-Chr11:22798840 4.10E-253 dispersed
Cco11g1170 Cco-Chr11:22798840 Cco03g0323 Cco-Chr3:3591795 8.90E-60 dispersed
Cco11g1169 Cco-Chr11:22792976 Cco11g1170 Cco-Chr11:22798840 1.00E-65 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1170 K00487 - csv:101205775 1011.13