Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1173 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCTAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCGGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCTCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCCTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGACGAGCTAACAGGCAACCAACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACTGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTCGAAACTGAAGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGAAATCGAGTCTCCATATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCTCTCCATTTTTGAGATCTAAACGACCGAGGCAACCGGGAATGCCAGATGACGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAATCCATCACTTTCAAATTCAATGCAGCCAAATTATATGCATTCGTTTTCCGGGTCTATGCTTCCAAACCTTGGTGGAGTTGATATTTCTCGGCAACTTGGTTTGTCAAATGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGGCAAGTATGAACTCATTGGGATCCGTGGTGCAGGCACCGCAACAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCCGCAGCTTCAGAGAAATGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGACTATGAATCAGTCCCCGCTCCCGGAACAGTTAAATCATCAGTTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTGGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCGACTAACCAAATGCTCGACATTCCTCAATTCACCCCAGCTGCAGCCCCTCCATCAAATGCGTTACCGCAGCAGACAGCAAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCGAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTACTTTCCGATATGTCTAGGCCAATGGGACTTCCTCCTACCCAAATGAATAATCAGCTCTCTGCAGCTACTAGCAGTTTAGTAACAGGAGCAGCAGGGGCTGGTCAATCTGGAATCACTGATGACATACCATCTTGCTCCACTTCACCTTCCACGAACAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACGGGATTGGTTGAGGATGTTGCTCAATCAGCTGCAACAATATTCAGTTCAAATACATTGGATACCATGTCACCAAATGCCAACTTAGTGCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTTGTTGCTCAGACGGATTTCTTAGACACGTCATCCTCCACGACCTCAGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAGGTACCGACAGATCTCCATAACATTCCGTATGGGGCTCATGTCGATGGACAAATGGTAACACAGTTAAATTCTGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACAATTAACGATAACGCCTTCTTGAATAGAAACCAATGGGCTCCTCCACCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTTTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAACGGGCTCAAAGTTCATAGTGTCGAATATCAGTACGGCTACGATTGCCCGTTACAAGAATCTTGCAGCAATGAAGGAGATATAGCCAACCAACACTCAGCAATGGCTTTTAGCCATTGCCTGGTTAAATTTTCTGGACCTCTTAGCCTAGACAACTTTGAAAGCATAGTTGAGAAGAAGTTGAATTACGATATTGTTGCCATTGTCGTCACCGAGGCTGATCTTAATTGCCACGCTGTAGTGTTATATTATCGTGATGAAGTTTAG 3537 44.76 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPSPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPASMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNPQLQRNVPQNLQMQQHQQILGQNQQQTMNQSPLPEQLNHQLQMSDNQVQMQMLQKFQQQQQSILAQQSALQPAQLTQLPEQQRQSVDASQSFSRSMSTNQMLDIPQFTPAAAPPSNALPQQTANCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPMGLPPTQMNNQLSAATSSLVTGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVTQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGLKVHSVEYQYGYDCPLQESCSNEGDIANQHSAMAFSHCLVKFSGPLSLDNFESIVEKKLNYDIVAIVVTEADLNCHAVVLYYRDEV 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22869457 22877125 - CcPI632755_11g011730.1 Cco11g1173 192409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1173 1178 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 1086 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco11g1173 1178 Pfam B3 DNA binding domain 134 236 IPR003340 GO:0003677(InterPro)
Cco11g1173 1178 FunFam Auxin response factor 990 1084 - -
Cco11g1173 1178 ProSiteProfiles PB1 domain profile. 995 1080 IPR053793 -
Cco11g1173 1178 Pfam Auxin response factor 260 343 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco11g1173 1178 Gene3D - 132 235 IPR015300 -
Cco11g1173 1178 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677(InterPro)
Cco11g1173 1178 SUPERFAMILY CAD & PB1 domains 1008 1074 - -
Cco11g1173 1178 MobiDBLite consensus disorder prediction 1 20 - -
Cco11g1173 1178 Gene3D - 298 368 - -
Cco11g1173 1178 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Cco11g1173 1178 MobiDBLite consensus disorder prediction 630 660 - -
Cco11g1173 1178 Pfam AUX/IAA family 993 1080 IPR033389 -
Cco11g1173 1178 MobiDBLite consensus disorder prediction 696 715 - -
Cco11g1173 1178 FunFam Auxin response factor 132 236 - -
Cco11g1173 1178 FunFam Auxin response factor 298 369 - -
Cco11g1173 1178 CDD B3_DNA 133 225 IPR003340 GO:0003677(InterPro)
Cco11g1173 1178 Gene3D - 991 1084 - -
Cco11g1173 1178 SMART B3_2 134 236 IPR003340 GO:0003677(InterPro)
Cco11g1173 1178 MobiDBLite consensus disorder prediction 668 689 - -
Cco11g1173 1178 MobiDBLite consensus disorder prediction 630 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0036 Cco-Chr11:420483 Cco11g1173 Cco-Chr11:22869457 3.10E-17 dispersed
Cco11g0155 Cco-Chr11:1637219 Cco11g1173 Cco-Chr11:22869457 1.30E-246 dispersed
Cco11g1173 Cco-Chr11:22869457 Cco04g2271 Cco-Chr4:36246732 5.20E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60275 PF02309 AUX_IAA 2.40E-07 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1173 - - - 0.0