Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1173 | ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCTAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCGGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCTCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCCTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGACGAGCTAACAGGCAACCAACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACTGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTCGAAACTGAAGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGAAATCGAGTCTCCATATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCTCTCCATTTTTGAGATCTAAACGACCGAGGCAACCGGGAATGCCAGATGACGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAATCCATCACTTTCAAATTCAATGCAGCCAAATTATATGCATTCGTTTTCCGGGTCTATGCTTCCAAACCTTGGTGGAGTTGATATTTCTCGGCAACTTGGTTTGTCAAATGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGGCAAGTATGAACTCATTGGGATCCGTGGTGCAGGCACCGCAACAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCCGCAGCTTCAGAGAAATGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGACTATGAATCAGTCCCCGCTCCCGGAACAGTTAAATCATCAGTTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTGGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCGACTAACCAAATGCTCGACATTCCTCAATTCACCCCAGCTGCAGCCCCTCCATCAAATGCGTTACCGCAGCAGACAGCAAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCGAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTACTTTCCGATATGTCTAGGCCAATGGGACTTCCTCCTACCCAAATGAATAATCAGCTCTCTGCAGCTACTAGCAGTTTAGTAACAGGAGCAGCAGGGGCTGGTCAATCTGGAATCACTGATGACATACCATCTTGCTCCACTTCACCTTCCACGAACAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACGGGATTGGTTGAGGATGTTGCTCAATCAGCTGCAACAATATTCAGTTCAAATACATTGGATACCATGTCACCAAATGCCAACTTAGTGCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTTGTTGCTCAGACGGATTTCTTAGACACGTCATCCTCCACGACCTCAGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAGGTACCGACAGATCTCCATAACATTCCGTATGGGGCTCATGTCGATGGACAAATGGTAACACAGTTAAATTCTGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACAATTAACGATAACGCCTTCTTGAATAGAAACCAATGGGCTCCTCCACCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTTTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAACGGGCTCAAAGTTCATAGTGTCGAATATCAGTACGGCTACGATTGCCCGTTACAAGAATCTTGCAGCAATGAAGGAGATATAGCCAACCAACACTCAGCAATGGCTTTTAGCCATTGCCTGGTTAAATTTTCTGGACCTCTTAGCCTAGACAACTTTGAAAGCATAGTTGAGAAGAAGTTGAATTACGATATTGTTGCCATTGTCGTCACCGAGGCTGATCTTAATTGCCACGCTGTAGTGTTATATTATCGTGATGAAGTTTAG | 3537 | 44.76 | MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPSPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPASMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNPQLQRNVPQNLQMQQHQQILGQNQQQTMNQSPLPEQLNHQLQMSDNQVQMQMLQKFQQQQQSILAQQSALQPAQLTQLPEQQRQSVDASQSFSRSMSTNQMLDIPQFTPAAAPPSNALPQQTANCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPMGLPPTQMNNQLSAATSSLVTGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVTQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGLKVHSVEYQYGYDCPLQESCSNEGDIANQHSAMAFSHCLVKFSGPLSLDNFESIVEKKLNYDIVAIVVTEADLNCHAVVLYYRDEV | 1178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22869457 | 22877125 | - | CcPI632755_11g011730.1 | Cco11g1173 | 192409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1173 | 1178 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 27 | 1086 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cco11g1173 | 1178 | Pfam | B3 DNA binding domain | 134 | 236 | IPR003340 | GO:0003677(InterPro) | |
Cco11g1173 | 1178 | FunFam | Auxin response factor | 990 | 1084 | - | - | |
Cco11g1173 | 1178 | ProSiteProfiles | PB1 domain profile. | 995 | 1080 | IPR053793 | - | |
Cco11g1173 | 1178 | Pfam | Auxin response factor | 260 | 343 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cco11g1173 | 1178 | Gene3D | - | 132 | 235 | IPR015300 | - | |
Cco11g1173 | 1178 | ProSiteProfiles | B3 DNA-binding domain profile. | 134 | 236 | IPR003340 | GO:0003677(InterPro) | |
Cco11g1173 | 1178 | SUPERFAMILY | CAD & PB1 domains | 1008 | 1074 | - | - | |
Cco11g1173 | 1178 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco11g1173 | 1178 | Gene3D | - | 298 | 368 | - | - | |
Cco11g1173 | 1178 | SUPERFAMILY | DNA-binding pseudobarrel domain | 123 | 263 | IPR015300 | - | |
Cco11g1173 | 1178 | MobiDBLite | consensus disorder prediction | 630 | 660 | - | - | |
Cco11g1173 | 1178 | Pfam | AUX/IAA family | 993 | 1080 | IPR033389 | - | |
Cco11g1173 | 1178 | MobiDBLite | consensus disorder prediction | 696 | 715 | - | - | |
Cco11g1173 | 1178 | FunFam | Auxin response factor | 132 | 236 | - | - | |
Cco11g1173 | 1178 | FunFam | Auxin response factor | 298 | 369 | - | - | |
Cco11g1173 | 1178 | CDD | B3_DNA | 133 | 225 | IPR003340 | GO:0003677(InterPro) | |
Cco11g1173 | 1178 | Gene3D | - | 991 | 1084 | - | - | |
Cco11g1173 | 1178 | SMART | B3_2 | 134 | 236 | IPR003340 | GO:0003677(InterPro) | |
Cco11g1173 | 1178 | MobiDBLite | consensus disorder prediction | 668 | 689 | - | - | |
Cco11g1173 | 1178 | MobiDBLite | consensus disorder prediction | 630 | 689 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco11g0036 | Cco-Chr11:420483 | Cco11g1173 | Cco-Chr11:22869457 | 3.10E-17 | dispersed | |
Cco11g0155 | Cco-Chr11:1637219 | Cco11g1173 | Cco-Chr11:22869457 | 1.30E-246 | dispersed | |
Cco11g1173 | Cco-Chr11:22869457 | Cco04g2271 | Cco-Chr4:36246732 | 5.20E-169 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60275 | PF02309 | AUX_IAA | 2.40E-07 | CL0072 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1173 | - | - | - | 0.0 |