Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1192 | ATGGATCCCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATCTGATCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACGAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCTCGTGACGACGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTTAGTACCATGATCATCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATCCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATCTTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAACAAGCACATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAGCAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAGGTAATTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCACTGCTGAACCACCAACTGGTTCCTTACACAATGAGAGCCTATCCATTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACCAGAGGTATTGTGAGTAATATTCTTGATGGAAAATTGGATTCCACAATGCATGCATCTTCACCTTTATTTTTGGGTATTCGTGAGCATAGCACGTTGAAGAATGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCGTTTTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCATGCAGCACGACCATAGGGGTACTGTAGCTGTCGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCACAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGACGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACAATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG | 2481 | 46.92 | MDPPTSNRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGRDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFSTMIIKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTAGSRSGSRDGGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNSGLQVANEMAAGGTWRKQEQSGAELVAEGNFGTVIVHDGDENDKVASQLDIGTAEPPTGSLHNESLSISVTRVDSSVLDRTRGIVSNILDGKLDSTMHASSPLFLGIREHSTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDHRGTVAVETLQELFTGDGQSKKGRRGHNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYDDMPLQELQATQEQQTIQNLCDTLRTILRL | 826 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23407614 | 23422895 | + | CcPI632755_11g011920.1 | Cco11g1192 | 192428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1192 | 826 | CDD | STKc_MAP4K3_like | 255 | 510 | - | - | |
Cco11g1192 | 826 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TAO | 228 | 788 | IPR050285 | GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER) | |
Cco11g1192 | 826 | Gene3D | Transferase(Phosphotransferase) domain 1 | 252 | 545 | - | - | |
Cco11g1192 | 826 | MobiDBLite | consensus disorder prediction | 115 | 200 | - | - | |
Cco11g1192 | 826 | SUPERFAMILY | Protein kinase-like (PK-like) | 253 | 511 | IPR011009 | - | |
Cco11g1192 | 826 | Pfam | Protein kinase domain | 256 | 510 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1192 | 826 | MobiDBLite | consensus disorder prediction | 24 | 101 | - | - | |
Cco11g1192 | 826 | FunFam | serine/threonine-protein kinase dst1 isoform X1 | 253 | 543 | - | - | |
Cco11g1192 | 826 | MobiDBLite | consensus disorder prediction | 213 | 252 | - | - | |
Cco11g1192 | 826 | ProSitePatterns | Protein kinases ATP-binding region signature. | 262 | 285 | IPR017441 | GO:0005524(InterPro) | |
Cco11g1192 | 826 | FunFam | Aurora kinase A | 248 | 337 | - | - | |
Cco11g1192 | 826 | MobiDBLite | consensus disorder prediction | 160 | 183 | - | - | |
Cco11g1192 | 826 | ProSiteProfiles | Protein kinase domain profile. | 256 | 510 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1192 | 826 | SMART | serkin_6 | 256 | 510 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1192 | 826 | MobiDBLite | consensus disorder prediction | 31 | 66 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco11g1192 | Cco-Chr11:23407614 | Cco11g1840 | Cco-Chr11:31059705 | 1.90E-64 | dispersed | |
Cco11g1192 | Cco-Chr11:23407614 | Cco07g0773 | Cco-Chr7:16443287 | 0.00E+00 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87243 | PF00069 | Pkinase | 7.40E-68 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1192 | - | - | - | 0.0 |