Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1214 ATGATCTTGTGGATTTCTGAAAGTACCTTCTTGACATTGGAGACAATGGTGGTGCATTTCCAGCACACTTTTCTTGTGTTCTTGGCGATTCTTGTTGTTGGGAAGGCAGAAATTTACATTGTCACCATTGAAGGAGAACCTATTGTAAGTTACAAAGGTGATCTGGATGGGTTTGAAGCTACAGCAATGGAATCTGATGAAAAGATCGACCCTACCAGTGAAATTGTGACATCCTTTGCTCGTCACCTCGAAAATAAACATGACATGCTTCTTGGGATGTTGTTTGAGAGAGGATCCTTCAAGAAGCTCTATAGTTATAAGCATCTCATCAATGGATTTGCTGTTGACATCACACATGAACAGGCAGAGATTCTAAGACATACACCAATTGTAAAATCTGTCGAGAGGGACTGGAAGGTTAGAAAACTAACAACACACACACCAGAGTTTTTGGGCCTTCCAACTGGCGTATGGCCAACCGGTGGTGGCTTTGACAGGGCTGGAGAAGACATTGTGATTGGATTTGTGGACTCTGGGATTTCTCCACACCATCCAAGTTTTGCAACATATAATACTGAACCTTTTGGGCCGTGTTTGAAGTATAAAGGGAAATGCGAAGTTGACCCTGACACTAAGAAGGATTTCTGTAATGGAAAGATTGTTGGAGCCCAACATTTTGCAGAAGCTGCTAAAGCAGCTGGGGCATTTGATCCAGCTATTCATTTTGCATCTCCTTTGGATGGTGACGGACATGGAAGCCATACAGCAGCAATTGCAGCTGGAAATAATGGAATCCCTGTGAGAATGCATGGCTATGAATTTGGGAAAGCAAGTGGGATGGCTCCTCGTGCTAGAATTGCTGTATATAAAGCTCTCTACAGAATATTTGGAGGATTTGTTGCTGATGTAGTCGCAGCCATTGATCAGGCTGTACATGATGGGGTCGACATTCTCAGTCTTTCAGTGGGGCCAAATAGTCCTCCTGCAACTACCAAGATCACATATTTAAACCCTTTTGATGCGACCCTTCTTTCAGCTGTGAAAGCTGGTGTGTTTGTTGCACAGGCTGCTGGAAATGGAGGTCCATTTCCTAAAACTTTGGTGTCATATAGTCCATGGATTGCAACTGTGGCAGCTGCAATTGATGACAGGAGATACAAAAATCATCTTACACTTGGCAATGGAAAAATTCTGGCTGGACTTGGGCTATCACCTGCTACACATTTAAATCGAACATACACATTGGTCGCGGCTAATGATGTTCTGTTAGATTCTTCGGTAATGAAGTACAGCCCTTCAGACTGCCAAAAGCCTGAAGTTCTAAACAAACGCTTGGTTGAAGGAAAAGTACTTCTATGTGGTTATTCATTCAGTTTTGTCGTTGGTACCGCTTCAATTAAGAAGGTCTCTCAAACAGCAAAAGCCCTTGGGGCAGCTGGGTTTGTTCTTGCTGTTGAAAACATTTCTCCGGGAGCAAAATTTGACCCTGTTCCTGTTGGCATTCCTGGAATTCTTATAACTGATGTCAGCAAGTCCATGGATCTTATAGACTACTACAACACCTCTACACCCAGAGACTGGACGGGTCGGGTCAAGAGCTTTGATGCTGTGGGTAGCATTGGGGATGGTTTGATGCCTTTATTATACAAATCAGCTCCTGAGGTAGCATTGTTTTCTGCTCGTGGGCCCAATATTAGAGATTTTAGTTTTCAGGAGGCAGACCTTCTCAAACCAGATATTCTAGCTCCTGGTTCTTTGATTTGGGCTGCTTGGTCTCCAAATGGGACGGACGAGCCGAACTATGTTGGAGAGGGATTTGCTATGATTTCTGGAACTAGTATGGCAGCACCACATATAGCTGGTATAGCAGCCCTTGTAAAACAGAAGCATCCAAACTGGAGTCCTGCAGCCATTAAATCGGCTTTAATGACAACATCAACAACAATGGACAGAGGAGGAAGACCTCTTAAAGCACAACAATTTTCTGAAACAGAAGCCATGAAATTGGTAACTGCAACACCTTTTGATTATGGGAGTGGTCATGTAAACCCAAGAGCAGCACTGGATCCGGGGCTCATCTTTGATGCAGGTTATGAAGATTACTTGGGATTCTTGTGCACAACGGCAGGCATCAACGTTCACGAGATACATAACTATACAAACTCACCTTGCAACTTCACCATGGGACATCCCTGGAATCTCAACAGCCCATCAATCACCATCGCCCATCTCGTGGGAAGTCAAACCGTTACTCGCACAGTAACAAATGTAGCTGAAGAAGAAACCTATACAATTACTGCAAGAATGGACCCTGCTGTTGCCATAGAAGTGAATCCTCCAGCAATGACTTTACGATCCGGTTCATCAAGAAAATTTTCGGTAACTCTCACAGCTCGATCACTGACAGGAACATATAGTTTCGGCCAGGTTCTATTGAAGGGCAGTAGAGGACACAAGGTTAGAATACCTGTAGTAGCCATGGGATACCAACGATGA 2496 43.87 MILWISESTFLTLETMVVHFQHTFLVFLAILVVGKAEIYIVTIEGEPIVSYKGDLDGFEATAMESDEKIDPTSEIVTSFARHLENKHDMLLGMLFERGSFKKLYSYKHLINGFAVDITHEQAEILRHTPIVKSVERDWKVRKLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGISPHHPSFATYNTEPFGPCLKYKGKCEVDPDTKKDFCNGKIVGAQHFAEAAKAAGAFDPAIHFASPLDGDGHGSHTAAIAAGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRIFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKITYLNPFDATLLSAVKAGVFVAQAAGNGGPFPKTLVSYSPWIATVAAAIDDRRYKNHLTLGNGKILAGLGLSPATHLNRTYTLVAANDVLLDSSVMKYSPSDCQKPEVLNKRLVEGKVLLCGYSFSFVVGTASIKKVSQTAKALGAAGFVLAVENISPGAKFDPVPVGIPGILITDVSKSMDLIDYYNTSTPRDWTGRVKSFDAVGSIGDGLMPLLYKSAPEVALFSARGPNIRDFSFQEADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSMAAPHIAGIAALVKQKHPNWSPAAIKSALMTTSTTMDRGGRPLKAQQFSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTAGINVHEIHNYTNSPCNFTMGHPWNLNSPSITIAHLVGSQTVTRTVTNVAEEETYTITARMDPAVAIEVNPPAMTLRSGSSRKFSVTLTARSLTGTYSFGQVLLKGSRGHKVRIPVVAMGYQR 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24120027 24126753 + CcPI632755_11g012140.1 Cco11g1214 192450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1214 831 Gene3D Peptidase S8/S53 domain 170 701 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco11g1214 831 Gene3D - 383 548 - -
Cco11g1214 831 Pfam PA domain 413 507 IPR003137 -
Cco11g1214 831 CDD PA_subtilisin_like 390 528 - -
Cco11g1214 831 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 34 143 IPR037045 -
Cco11g1214 831 Pfam Subtilase family 168 649 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco11g1214 831 SUPERFAMILY Subtilisin-like 143 692 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco11g1214 831 Pfam Peptidase inhibitor I9 78 141 IPR010259 -
Cco11g1214 831 CDD Peptidases_S8_3 144 647 IPR034197 -
Cco11g1214 831 Pfam Fibronectin type-III domain 733 825 IPR041469 -
Cco11g1214 831 Gene3D - 705 828 - -
Cco11g1214 831 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 87 801 IPR045051 -
Cco11g1214 831 SUPERFAMILY Protease propeptides/inhibitors 100 141 - -
Cco11g1214 831 ProSiteProfiles Serine proteases, subtilase domain profile. 137 688 - -
Cco11g1214 831 FunFam Subtilisin-like protease SBT1.5 170 392 - -
Cco11g1214 831 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 173 184 IPR023827 -
Cco11g1214 831 ProSitePatterns Serine proteases, subtilase family, serine active site. 611 621 IPR023828 -
Cco11g1214 831 PRINTS Subtilisin serine protease family (S8) signature 247 260 IPR015500 -
Cco11g1214 831 PRINTS Subtilisin serine protease family (S8) signature 610 626 IPR015500 -
Cco11g1214 831 PRINTS Subtilisin serine protease family (S8) signature 168 187 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1038 Cco-Chr1:13424511 Cco11g1214 Cco-Chr11:24120027 2.20E-160 dispersed
Cco04g2337 Cco-Chr4:36816173 Cco11g1214 Cco-Chr11:24120027 2.20E-190 dispersed
Cco07g1576 Cco-Chr7:29753633 Cco11g1214 Cco-Chr11:24120027 1.90E-06 dispersed
Cco10g1903 Cco-Chr10:32583886 Cco11g1214 Cco-Chr11:24120027 1.00E-47 dispersed
Cco11g1214 Cco-Chr11:24120027 Cco11g1215 Cco-Chr11:24131787 4.80E-12 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1214 - - - 0.0