Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1224 | ATGATGGGTGAGGAGGCAATGGAGAAGATCAATAAGAAATTAATGAGAGAAAACAAATTGCAAAGAAGCCACTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTTCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTCATTGTCCCTACAAGAACTCTTATTGTCGTTCATGATTCCCTCCTCATTTCCCAACTTCAAATTGTCAAAGCTCTGAATGAAGCAAGATTAGAGGCAAATATACAATTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGATTGCTTCTAACGGCGTCGTTTTTGAAGTATGTGTACCACCCATTGCGGTGGCTTGCCGTCGCCGCCGTTGCCGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCCGCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCTGTTGTGGGGACAATTGCAATGGATGATTACATGGAAGCTGGAAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGCTGCAATGAGTTCATTGATGAGGGTAGCCCCTGACAAAGCGATTATAGCTGAAAGTGGAGAGGTTGTGGATACAAAAGAGGTGAAATTGAACAGTGTATTGGCTGTGAAGGCTGGGGAAGTTATTCCCATTGATGGTATTGTTGTGGAAGGAAAATGTGAAGTTGATGAGAAAAGTTTGACTGGAGAAACATTCCCAGTTTCCAAACACAAACATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATATCAGTGTTCAAACTACAGTTGTTGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCATAATAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCTGCTGTTGTTATGATATCAGCTTGTCTAGCAGCCATTCCAGCTGCATTGAGAGTTCATAATCTCAGCCATTGGCTTCACTTAGCTTTGGTGGTCTTAGTGAGTGCATGTCCCTGTGCCCTAATTCTCTCCACCCCGGTCGCCGCCTTTTGTGCCCTTACGAAGGCTGCCATGGCCGGAGTTTTGATCAAAGGCAGCGACCACCTTGAAGTTCTTTCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACAATCACTAGAGGTGAATTTGCTGTAACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCCACACCTTGCTCCAATGGGTTTCAAGCATCGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTGAACCATGGAAAGTTGTTTTCTATTGATCTTAAACCCGAAAGCGTTGAGGACTTTGAGAATTTTCCAGGAGAGGGTGTTCGTGGGAAGATGGATGGGAATGATATTTACATTGGAAGTAAGAAAATTGGGGATAGAGCTGGCTACCACACACCAGATTTGAAGTTATTTGATGATGAAGCAAAACAAGAGCAAACCCTGGGATATGTATTTTGTGGGGGGACGTTAATTGGATCCTTTGGTCTTTCGGATTCGTGTCGTTCGGGAGTCAAAGAGGCAATCCAGGAGATTAAGAGTTTTGGTATTAAAACTGCTATGCTCACCGGAGATTGTAGTGCAGCTGCCATGCATGCCCAAGAACAGCTCGGGAATGCGTTCGATGTAATCCATTCACAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAAGGATGGAGCAATAATTGCCATGGTTGGAGATGGCTTAAATGATACTCCAGCATTAGCCACTGCTGATATTGGCATATCAATGGGTGTTTCAGGTTCAGCATTGGCCACTCAAACTGGGAATGTGATCTTAATGTCAAATGACATGAGAAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATTCCATACAAAAGTAGTTCAAAATGTCATTTTGTCAATTGGTACCAAGACTGCCATCCTCGGCCTAGCATTCGCTGGACATCCGCTCGTTTGGGCAGCTGTTCTCGCCGATGTCGGTACTTGCCTAATGGTCATCTTGAATAGCATGCTCCTTTTGAGAGGAATTGATCACAAACATGGGAAGAAATGTTGCAAATCTTCCAAGTCATGCTTGGCAAAACATGGACCACGATGCAATGGTGGTAGCACTCGATTGTCTCATCATCACGAGCATCATCATCATCACTACAATCATCGATGCCATATCGTCGATGATCAATCGCCTAGTCGAGAGAATAATCATATCCATAAGCATTGTTGTTTTGAGAAAAAGGATCATAAGATTCAGCTTTCTAATCAAGATCACAATAAAAAAAATTGTGGAATGAATCACGAGAAGAATCATGATCAATATGGTGATCATGAATGTGAAGAAACTAATGTGCCTAGTAAAAAAGAACATAAATTTCATCACAACCACCATTCAAATCAATGTGAGAAAGAGAGTAATGGAACTTCTTCAAAGAAAGTGGCTGAATCAAATTGTAATTGCCACTCACATCATATTGCTATTGAGATTCATGAAGGTAATGAGGGAGAGAGAGAAGAGCATAAATAA | 2631 | 41.43 | MMGEEAMEKINKKLMRENKLQRSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMRVAPDKAIIAESGEVVDTKEVKLNSVLAVKAGEVIPIDGIVVEGKCEVDEKSLTGETFPVSKHKHSLVWAGTINLNGYISVQTTVVAEDCVVAKMAELVEEAHNNKSKTQRFIDECAKYYTPAVVMISACLAAIPAALRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLSKIKVMAFDKTGTITRGEFAVTHFQALRDDISFHTLLQWVSSIESKSSHPMAAALVNHGKLFSIDLKPESVEDFENFPGEGVRGKMDGNDIYIGSKKIGDRAGYHTPDLKLFDDEAKQEQTLGYVFCGGTLIGSFGLSDSCRSGVKEAIQEIKSFGIKTAMLTGDCSAAAMHAQEQLGNAFDVIHSQLLPKEKANIIKEFKKDGAIIAMVGDGLNDTPALATADIGISMGVSGSALATQTGNVILMSNDMRKIPKAIKLAKKFHTKVVQNVILSIGTKTAILGLAFAGHPLVWAAVLADVGTCLMVILNSMLLLRGIDHKHGKKCCKSSKSCLAKHGPRCNGGSTRLSHHHEHHHHHYNHRCHIVDDQSPSRENNHIHKHCCFEKKDHKIQLSNQDHNKKNCGMNHEKNHDQYGDHECEETNVPSKKEHKFHHNHHSNQCEKESNGTSSKKVAESNCNCHSHHIAIEIHEGNEGEREEHK | 876 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24327117 | 24335401 | - | CcPI632755_11g012240.1 | Cco11g1224 | 192460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1224 | 876 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 405 | 411 | IPR018303 | - | |
Cco11g1224 | 876 | SFLD | p-type atpase | 385 | 658 | IPR044492 | - | |
Cco11g1224 | 876 | NCBIfam | heavy metal translocating P-type ATPase | 154 | 709 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Cco11g1224 | 876 | Gene3D | - | 191 | 306 | - | - | |
Cco11g1224 | 876 | Gene3D | - | 414 | 537 | IPR023299 | GO:0000166(InterPro) | |
Cco11g1224 | 876 | Gene3D | - | 17 | 89 | - | - | |
Cco11g1224 | 876 | MobiDBLite | consensus disorder prediction | 809 | 849 | - | - | |
Cco11g1224 | 876 | Pfam | E1-E2 ATPase | 215 | 381 | - | - | |
Cco11g1224 | 876 | FunFam | Putative cadmium/zinc-transporting ATPase 3 | 17 | 90 | - | - | |
Cco11g1224 | 876 | NCBIfam | cadmium family heavy metal-translocating P-type ATPase | 154 | 493 | - | - | |
Cco11g1224 | 876 | Pfam | haloacid dehalogenase-like hydrolase | 399 | 620 | - | - | |
Cco11g1224 | 876 | SFLD | C1.7: P-type atpase like | 385 | 658 | - | - | |
Cco11g1224 | 876 | Gene3D | - | 395 | 657 | IPR023214 | - | |
Cco11g1224 | 876 | FunFam | Putative cadmium/zinc-transporting ATPase 3 | 414 | 537 | - | - | |
Cco11g1224 | 876 | FunFam | Copper-transporting ATPase 1, putative | 192 | 306 | - | - | |
Cco11g1224 | 876 | ProSiteProfiles | Heavy-metal-associated domain profile. | 21 | 87 | IPR006121 | GO:0046872(InterPro) | |
Cco11g1224 | 876 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 15 | 839 | IPR051014 | GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER) | |
Cco11g1224 | 876 | PRINTS | Copper-transporting ATPase signature | 194 | 212 | - | - | |
Cco11g1224 | 876 | PRINTS | Copper-transporting ATPase signature | 583 | 600 | - | - | |
Cco11g1224 | 876 | PRINTS | Copper-transporting ATPase signature | 641 | 655 | - | - | |
Cco11g1224 | 876 | SUPERFAMILY | HMA, heavy metal-associated domain | 17 | 86 | IPR036163 | GO:0046872(InterPro) | |
Cco11g1224 | 876 | PRINTS | P-type cation-transporting ATPase superfamily signature | 252 | 266 | - | - | |
Cco11g1224 | 876 | PRINTS | P-type cation-transporting ATPase superfamily signature | 606 | 625 | - | - | |
Cco11g1224 | 876 | PRINTS | P-type cation-transporting ATPase superfamily signature | 551 | 561 | - | - | |
Cco11g1224 | 876 | PRINTS | P-type cation-transporting ATPase superfamily signature | 403 | 417 | - | - | |
Cco11g1224 | 876 | PRINTS | P-type cation-transporting ATPase superfamily signature | 630 | 642 | - | - | |
Cco11g1224 | 876 | SUPERFAMILY | Calcium ATPase, transduction domain A | 217 | 302 | IPR008250 | - | |
Cco11g1224 | 876 | MobiDBLite | consensus disorder prediction | 809 | 823 | - | - | |
Cco11g1224 | 876 | CDD | P-type_ATPase_HM | 104 | 708 | - | - | |
Cco11g1224 | 876 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 155 | 397 | IPR023298 | - | |
Cco11g1224 | 876 | NCBIfam | HAD-IC family P-type ATPase | 177 | 683 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cco11g1224 | 876 | SUPERFAMILY | HAD-like | 402 | 707 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0892 | Cco-Chr10:18632681 | Cco11g1224 | Cco-Chr11:24327117 | 1.40E-55 | dispersed | |
Cco11g1224 | Cco-Chr11:24327117 | Cco06g1551 | Cco-Chr6:26066522 | 1.50E-282 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1224 | K01534 | - | csv:101203668 | 1403.27 |