Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1224 ATGATGGGTGAGGAGGCAATGGAGAAGATCAATAAGAAATTAATGAGAGAAAACAAATTGCAAAGAAGCCACTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTTCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTCATTGTCCCTACAAGAACTCTTATTGTCGTTCATGATTCCCTCCTCATTTCCCAACTTCAAATTGTCAAAGCTCTGAATGAAGCAAGATTAGAGGCAAATATACAATTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGATTGCTTCTAACGGCGTCGTTTTTGAAGTATGTGTACCACCCATTGCGGTGGCTTGCCGTCGCCGCCGTTGCCGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCCGCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCTGTTGTGGGGACAATTGCAATGGATGATTACATGGAAGCTGGAAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGCTGCAATGAGTTCATTGATGAGGGTAGCCCCTGACAAAGCGATTATAGCTGAAAGTGGAGAGGTTGTGGATACAAAAGAGGTGAAATTGAACAGTGTATTGGCTGTGAAGGCTGGGGAAGTTATTCCCATTGATGGTATTGTTGTGGAAGGAAAATGTGAAGTTGATGAGAAAAGTTTGACTGGAGAAACATTCCCAGTTTCCAAACACAAACATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATATCAGTGTTCAAACTACAGTTGTTGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCATAATAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCTGCTGTTGTTATGATATCAGCTTGTCTAGCAGCCATTCCAGCTGCATTGAGAGTTCATAATCTCAGCCATTGGCTTCACTTAGCTTTGGTGGTCTTAGTGAGTGCATGTCCCTGTGCCCTAATTCTCTCCACCCCGGTCGCCGCCTTTTGTGCCCTTACGAAGGCTGCCATGGCCGGAGTTTTGATCAAAGGCAGCGACCACCTTGAAGTTCTTTCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACAATCACTAGAGGTGAATTTGCTGTAACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCCACACCTTGCTCCAATGGGTTTCAAGCATCGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTGAACCATGGAAAGTTGTTTTCTATTGATCTTAAACCCGAAAGCGTTGAGGACTTTGAGAATTTTCCAGGAGAGGGTGTTCGTGGGAAGATGGATGGGAATGATATTTACATTGGAAGTAAGAAAATTGGGGATAGAGCTGGCTACCACACACCAGATTTGAAGTTATTTGATGATGAAGCAAAACAAGAGCAAACCCTGGGATATGTATTTTGTGGGGGGACGTTAATTGGATCCTTTGGTCTTTCGGATTCGTGTCGTTCGGGAGTCAAAGAGGCAATCCAGGAGATTAAGAGTTTTGGTATTAAAACTGCTATGCTCACCGGAGATTGTAGTGCAGCTGCCATGCATGCCCAAGAACAGCTCGGGAATGCGTTCGATGTAATCCATTCACAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAAGGATGGAGCAATAATTGCCATGGTTGGAGATGGCTTAAATGATACTCCAGCATTAGCCACTGCTGATATTGGCATATCAATGGGTGTTTCAGGTTCAGCATTGGCCACTCAAACTGGGAATGTGATCTTAATGTCAAATGACATGAGAAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATTCCATACAAAAGTAGTTCAAAATGTCATTTTGTCAATTGGTACCAAGACTGCCATCCTCGGCCTAGCATTCGCTGGACATCCGCTCGTTTGGGCAGCTGTTCTCGCCGATGTCGGTACTTGCCTAATGGTCATCTTGAATAGCATGCTCCTTTTGAGAGGAATTGATCACAAACATGGGAAGAAATGTTGCAAATCTTCCAAGTCATGCTTGGCAAAACATGGACCACGATGCAATGGTGGTAGCACTCGATTGTCTCATCATCACGAGCATCATCATCATCACTACAATCATCGATGCCATATCGTCGATGATCAATCGCCTAGTCGAGAGAATAATCATATCCATAAGCATTGTTGTTTTGAGAAAAAGGATCATAAGATTCAGCTTTCTAATCAAGATCACAATAAAAAAAATTGTGGAATGAATCACGAGAAGAATCATGATCAATATGGTGATCATGAATGTGAAGAAACTAATGTGCCTAGTAAAAAAGAACATAAATTTCATCACAACCACCATTCAAATCAATGTGAGAAAGAGAGTAATGGAACTTCTTCAAAGAAAGTGGCTGAATCAAATTGTAATTGCCACTCACATCATATTGCTATTGAGATTCATGAAGGTAATGAGGGAGAGAGAGAAGAGCATAAATAA 2631 41.43 MMGEEAMEKINKKLMRENKLQRSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMRVAPDKAIIAESGEVVDTKEVKLNSVLAVKAGEVIPIDGIVVEGKCEVDEKSLTGETFPVSKHKHSLVWAGTINLNGYISVQTTVVAEDCVVAKMAELVEEAHNNKSKTQRFIDECAKYYTPAVVMISACLAAIPAALRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLSKIKVMAFDKTGTITRGEFAVTHFQALRDDISFHTLLQWVSSIESKSSHPMAAALVNHGKLFSIDLKPESVEDFENFPGEGVRGKMDGNDIYIGSKKIGDRAGYHTPDLKLFDDEAKQEQTLGYVFCGGTLIGSFGLSDSCRSGVKEAIQEIKSFGIKTAMLTGDCSAAAMHAQEQLGNAFDVIHSQLLPKEKANIIKEFKKDGAIIAMVGDGLNDTPALATADIGISMGVSGSALATQTGNVILMSNDMRKIPKAIKLAKKFHTKVVQNVILSIGTKTAILGLAFAGHPLVWAAVLADVGTCLMVILNSMLLLRGIDHKHGKKCCKSSKSCLAKHGPRCNGGSTRLSHHHEHHHHHYNHRCHIVDDQSPSRENNHIHKHCCFEKKDHKIQLSNQDHNKKNCGMNHEKNHDQYGDHECEETNVPSKKEHKFHHNHHSNQCEKESNGTSSKKVAESNCNCHSHHIAIEIHEGNEGEREEHK 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24327117 24335401 - CcPI632755_11g012240.1 Cco11g1224 192460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1224 876 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Cco11g1224 876 SFLD p-type atpase 385 658 IPR044492 -
Cco11g1224 876 NCBIfam heavy metal translocating P-type ATPase 154 709 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cco11g1224 876 Gene3D - 191 306 - -
Cco11g1224 876 Gene3D - 414 537 IPR023299 GO:0000166(InterPro)
Cco11g1224 876 Gene3D - 17 89 - -
Cco11g1224 876 MobiDBLite consensus disorder prediction 809 849 - -
Cco11g1224 876 Pfam E1-E2 ATPase 215 381 - -
Cco11g1224 876 FunFam Putative cadmium/zinc-transporting ATPase 3 17 90 - -
Cco11g1224 876 NCBIfam cadmium family heavy metal-translocating P-type ATPase 154 493 - -
Cco11g1224 876 Pfam haloacid dehalogenase-like hydrolase 399 620 - -
Cco11g1224 876 SFLD C1.7: P-type atpase like 385 658 - -
Cco11g1224 876 Gene3D - 395 657 IPR023214 -
Cco11g1224 876 FunFam Putative cadmium/zinc-transporting ATPase 3 414 537 - -
Cco11g1224 876 FunFam Copper-transporting ATPase 1, putative 192 306 - -
Cco11g1224 876 ProSiteProfiles Heavy-metal-associated domain profile. 21 87 IPR006121 GO:0046872(InterPro)
Cco11g1224 876 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 15 839 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cco11g1224 876 PRINTS Copper-transporting ATPase signature 194 212 - -
Cco11g1224 876 PRINTS Copper-transporting ATPase signature 583 600 - -
Cco11g1224 876 PRINTS Copper-transporting ATPase signature 641 655 - -
Cco11g1224 876 SUPERFAMILY HMA, heavy metal-associated domain 17 86 IPR036163 GO:0046872(InterPro)
Cco11g1224 876 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Cco11g1224 876 PRINTS P-type cation-transporting ATPase superfamily signature 606 625 - -
Cco11g1224 876 PRINTS P-type cation-transporting ATPase superfamily signature 551 561 - -
Cco11g1224 876 PRINTS P-type cation-transporting ATPase superfamily signature 403 417 - -
Cco11g1224 876 PRINTS P-type cation-transporting ATPase superfamily signature 630 642 - -
Cco11g1224 876 SUPERFAMILY Calcium ATPase, transduction domain A 217 302 IPR008250 -
Cco11g1224 876 MobiDBLite consensus disorder prediction 809 823 - -
Cco11g1224 876 CDD P-type_ATPase_HM 104 708 - -
Cco11g1224 876 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 397 IPR023298 -
Cco11g1224 876 NCBIfam HAD-IC family P-type ATPase 177 683 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco11g1224 876 SUPERFAMILY HAD-like 402 707 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0892 Cco-Chr10:18632681 Cco11g1224 Cco-Chr11:24327117 1.40E-55 dispersed
Cco11g1224 Cco-Chr11:24327117 Cco06g1551 Cco-Chr6:26066522 1.50E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1224 K01534 - csv:101203668 1403.27