Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1245 ATGATGGGATCTTTAGTGGTGGCGGAATACAATGTGTCCTTTATTGGCTTGAGGACTTTCACCATGGCTGCTGATTCTTCCTTTGATGGTGCCATTTTCGACTCGCCAAAATCTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTATATGAAATTTCAAAGTCACATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCATATCCGAAAAGAAGTCATCCGTGCCTGAGGTTTTGAAAAACCTTGAGCCACAGTCTCCTGCAGGTGGCCATAAAAATACCAAAAGGCAGAGGAAATCTGAGCATCTAGCTCAACTTTCTGTTCCTGCAAATGACTTTCCAACCAGTAGTTCCCATAATGATTTGGGTCATATGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTGAGTCCCGAAGATGCTTTTTGTAGAAGGTGTTCATGTTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCAGGAATTTCGAAAGCCGGACGAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTTTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACAAGAAGGGTCGACATACTGTGTTATCGTGTTTCTTTGAGTCAAAAGCTTCTCCATGGAACTGAGAAGTATAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCCGGTGTACCGGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCTGGACCCGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCAATGATCTCCAGCAATTCCTTGCACCTTTCGCCTAATCCTGACATTCAAGATGCAAATTTTGTTCCTGCAAACATGGTTAGATTTGAAGATGTTCAGTCAACATCCCTCACTCTAGTTTTGAGTTGTGAAAATGGATCCTCTGAGAACCAGGTCGGCTTCACCTTATGGCATCGTAAGGCAGATGATGCAGATTACCCGGCAGAACCAACATGTATTCTACGACAACCGAAGGCGAGGTGTGCTGTGATGGGACTATCACCTGCTACTACATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAGTTTGAAGTGCAGTTCTCAACAATCAGGGAGGTAGAAGAAAACCCAGGCTGTTTAGAAATTGAAAGAAGCCAAAGCCACGCAACCAACTGTAGTGACCTTTCTAATCCTTCTTCGGTTGAAGACGAAACTACAGACATTCTTCCGTATGGTGATCGAACCGATAACCTAGGGAAAAACTCCACTGCCTATTCAAAGGGCACTGAAATGCTTTCCTCGGCTATCTTATCGACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCGGGAACAGTTTCTGTGTTGGATGAGGCAAATGCTGCAGGAATGGTAGTTTTGATCCCCAGTTCTGTTGCATCAAAGCTCGAGAACAGGCATGGACCAACTGCCCCAAAACTCAACACCGATAATCATTTAAACGCCCTTGTTCGATCTGGTATGGAGCGCCAGCCATTCGTTGGCTGTTCTTCAGATGGCTTGCCAATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGAGGTGAGAGACCGAAATCCGGCTGCAAGGATCTCGACAATAGGACTCGAAAAGTAGGGGAACCCCAAGACGGCGGCACGTCAAAGATGCGAACTGGGGAAAGACAGGACGACAAATGTGCTGAAAATGGTGTTTCAGATCGGGATTTCGAGCATTATGTGAAGGTCATTAGATGGTTAGAATGCGAGGGTCATATTGAAAAAAATTTCAGGCAGAAATTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTAGATACTTTTTCTGAATGCATTTCGAGCAAAAAACCGACGACTATGCCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2268 44.22 MMGSLVVAEYNVSFIGLRTFTMAADSSFDGAIFDSPKSSKLTMQEKRELVYEISKSHGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKSSVPEVLKNLEPQSPAGGHKNTKRQRKSEHLAQLSVPANDFPTSSSHNDLGHMACCKNLACRATLSPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGRSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDESVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMISSNSLHLSPNPDIQDANFVPANMVRFEDVQSTSLTLVLSCENGSSENQVGFTLWHRKADDADYPAEPTCILRQPKARCAVMGLSPATTYHFKIVQFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLSSAILSTDAFNLSDNGEEGTPAGTVSVLDEANAAGMVVLIPSSVASKLENRHGPTAPKLNTDNHLNALVRSGMERQPFVGCSSDGLPITPCKLEVLKDSLGRGERPKSGCKDLDNRTRKVGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTMPPGFCMKLWH 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24705609 24712312 - CcPI632755_11g012450.1 Cco11g1245 192481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1245 755 MobiDBLite consensus disorder prediction 622 662 - -
Cco11g1245 755 MobiDBLite consensus disorder prediction 113 143 - -
Cco11g1245 755 Pfam PHD - plant homeodomain finger protein 161 281 IPR032881 -
Cco11g1245 755 PANTHER VIN3-LIKE PROTEIN 2-RELATED 34 755 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1183 Cco-Chr6:21146552 Cco11g1245 Cco-Chr11:24705609 3.90E-94 dispersed
Cco11g0279 Cco-Chr11:2775398 Cco11g1245 Cco-Chr11:24705609 5.00E-82 dispersed
Cco08g1315 Cco-Chr8:25026113 Cco11g1245 Cco-Chr11:24705609 1.70E-110 transposed
Cco11g1245 Cco-Chr11:24705609 Cco06g1539 Cco-Chr6:25895967 5.10E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1245 - - - 0.0