Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1297 ATGAACCTTTCTCGGTGGAAGAAAAGGAATAGTGATGGATTCTTATGGAGCATCCAGGAACAAGAAGATGAAATCGGACGACGAATTCTTACATGGTCCAAGGAAATCAAAGGGCCCATATATAGTCTTTCAGTAAGGTACAAAGGAGTTTTCCCTTTGGCCGATTTCCCTTCTCTTTCCTTCCCTCCGCCTTCGACAATCGACACCGTCATCTCCGTTCTTCAATTCTTCCTCCTCTCAATCTTCTCATCTTCCTCACCTCACCGCTTGCTGCTTTCTTCCCTCACCGTCGATCTCCCTCCACTCCGTCGATCACCCTCACGCCGTTTCTCTAATTCCAGTCCATCGATCTCCCTCACGCCGCCTCTCTCATCCACTCTCTCGATTTCCACTGGCAGTGTGTCCAAACTCCCAAGGGCCTCAGGCTTAGCTATTCATCAGTGTAAGGATGTTTTTTTGATTCCTTATGATGTGCAAATGGATTTGGGGAAACAGAAGACTTTGATGGATAGCCCTTTGACGTGGAGCTCTACCCCTAATTCCTCACCTATGTCAAATCCTGGTTCAAATGATGAAAGCCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTCAGAGGGATATTACATATGAGGAGTTAATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGACGGGTTCACTAGGCTGAGGATATTCTTGTTTTCACATCCTGAACAAGATGGCTCTTTGCCCTTTGTGGATGGTGATGAGAGGGATACTGAAAGACGATATGTAGATGCTCTTAATAATTCGAATGACATGAATGATTTTGTTAGACAACAACAGCTAAATTCCCCTGCAATTAGTGGCATAGATGATATGCACGGGAATGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGCGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCCCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCCCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCCAGGCATCATGGTCCATATGATTCAAGAACGATGGGTGAATATCCATCTTCTCCATTTGCACGATACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAGCAAATGAATCACCAACATATGTATGAACATCAACCACAATATAACGAGAATATTGTATGGCTGCCAAATGGAACAACTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCTAGATGGGAATAGTTCTTGTGAACACTGTCGGGCAAATTTTCATCGGTATCAAACACACATGGAACAAGCTAATACGATAAATGGACTTCCCCCTGAATACCCTCAGAATAGAGAGGCCTTGATGCAGAAGGCAGACATGAAGTTCCATCATGGTATTTTTCCAAATGAGCAGAATATTAATGATCATCGATCTACTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACACCAGGTGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGGCTGGACGATTGAATGATCACTACCTTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACAAATTTTCATGATGAGGGATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCAGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCACTTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAAAAAATTTTGGGTATTGAGGGTGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCGCGGTTGGCCATGACAATCAACACTTAACAAGTTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCACCATTTATTCATGAAAAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCGCAACTGAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAGTTGTGCATGGGGAAGGAAATGGACACATGATTAACGATACAGGGAAAGTTGACATCTCTGAAGCACACATTGTTTCTCATCCCGGGCAAAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATGAACTCTGCAGTAGAAAATGGTGATGGCCTGAAACCTTCTGCAGAGACTCTTGAAAAGCCTAAACTATCAGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGAAAAGAGCAGCACTAGAAGTATCCGAAGAGGCAATGGTTGAAGAAACCGCTCAAAGGGGTCCTGATTCAATAGGAAAGAAAGAGACAACAAATGAGCAACATTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCTGAAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCGAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGATGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATCGATCGTCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTATGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTGTCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGATCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATAGACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCACGTAGGCAATGGGAATGATTTCACTTGGGATTCTGCCGTTGGAAGCGTACGCCATACAGTAACGATACAATACATATATATGTTGGTTCTGCTATAA 3951 43.18 MNLSRWKKRNSDGFLWSIQEQEDEIGRRILTWSKEIKGPIYSLSVRYKGVFPLADFPSLSFPPPSTIDTVISVLQFFLLSIFSSSSPHRLLLSSLTVDLPPLRRSPSRRFSNSSPSISLTPPLSSTLSISTGSVSKLPRASGLAIHQCKDVFLIPYDVQMDLGKQKTLMDSPLTWSSTPNSSPMSNPGSNDESPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQLNSPAISGIDDMHGNEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRTMGEYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTTSEESGFPGNILHGHGVLDGNSSCEHCRANFHRYQTHMEQANTINGLPPEYPQNREALMQKADMKFHHGIFPNEQNINDHRSTYNETPPHEKGWIMQHQVSVRGDDTRTHVSGAGRLNDHYLVDGSGSNFPPTQSNITDGYHASTNFHDEGFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPTYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQKILGIEGATGSEHLPGHVLKTNSTAVGHDNQHLTSLEHIQPHLDKINLVASPMQRSDSSSPFIHEKKMVAPFHPSQNPQLRAVSVVNEAMMMERKVVHGEGNGHMINDTGKVDISEAHIVSHPGQNNTDDTYSKVAPLESLNSTCMNSAVENGDGLKPSAETLEKPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETAQRGPDSIGKKETTNEQHSSNAHGEPELETESDNQSSEIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNRLHCWETTSTDMKEIHVGNGNDFTWDSAVGSVRHTVTIQYIYMLVLL 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25531318 25544319 - CcPI632755_11g012970.1 Cco11g1297 192533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1297 1316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1123 1135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 SMART serkin_6 998 1267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 Gene3D Transferase(Phosphotransferase) domain 1 1085 1297 - -
Cco11g1297 1316 MobiDBLite consensus disorder prediction 171 192 - -
Cco11g1297 1316 CDD STKc_MAP3K-like 1004 1261 - -
Cco11g1297 1316 Pfam PB1 domain 211 295 IPR000270 GO:0005515(InterPro)
Cco11g1297 1316 SMART PB1_new 210 295 IPR000270 GO:0005515(InterPro)
Cco11g1297 1316 PRINTS Tyrosine kinase catalytic domain signature 1117 1135 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 PRINTS Tyrosine kinase catalytic domain signature 1232 1254 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 PRINTS Tyrosine kinase catalytic domain signature 1080 1093 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 PRINTS Tyrosine kinase catalytic domain signature 1188 1210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 215 297 - -
Cco11g1297 1316 SUPERFAMILY CAD & PB1 domains 212 300 - -
Cco11g1297 1316 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 991 1085 - -
Cco11g1297 1316 ProSitePatterns Protein kinases ATP-binding region signature. 1004 1025 IPR017441 GO:0005524(InterPro)
Cco11g1297 1316 MobiDBLite consensus disorder prediction 929 992 - -
Cco11g1297 1316 CDD PB1_UP2 199 295 - -
Cco11g1297 1316 PANTHER SERINE-THREONINE PROTEIN KINASE 177 1265 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco11g1297 1316 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1086 1276 - -
Cco11g1297 1316 Pfam Protein tyrosine and serine/threonine kinase 1000 1261 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1297 1316 Gene3D - 214 297 - -
Cco11g1297 1316 SUPERFAMILY Protein kinase-like (PK-like) 985 1259 IPR011009 -
Cco11g1297 1316 Gene3D Phosphorylase Kinase; domain 1 984 1084 - -
Cco11g1297 1316 ProSiteProfiles Protein kinase domain profile. 998 1275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0407 Cco-Chr5:3346886 Cco11g1297 Cco-Chr11:25531318 6.30E-143 dispersed
Cco06g1388 Cco-Chr6:24375725 Cco11g1297 Cco-Chr11:25531318 6.20E-140 dispersed
Cco10g0669 Cco-Chr10:9227074 Cco11g1297 Cco-Chr11:25531318 4.80E-30 dispersed
Cco11g1297 Cco-Chr11:25531318 Cco11g1512 Cco-Chr11:27937166 8.70E-48 dispersed
Cco11g1297 Cco-Chr11:25531318 Cco03g0422 Cco-Chr3:4527491 1.80E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87245 PF07714 PK_Tyr_Ser-Thr 1.30E-61 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1297 - - - 0.0