Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1297 | ATGAACCTTTCTCGGTGGAAGAAAAGGAATAGTGATGGATTCTTATGGAGCATCCAGGAACAAGAAGATGAAATCGGACGACGAATTCTTACATGGTCCAAGGAAATCAAAGGGCCCATATATAGTCTTTCAGTAAGGTACAAAGGAGTTTTCCCTTTGGCCGATTTCCCTTCTCTTTCCTTCCCTCCGCCTTCGACAATCGACACCGTCATCTCCGTTCTTCAATTCTTCCTCCTCTCAATCTTCTCATCTTCCTCACCTCACCGCTTGCTGCTTTCTTCCCTCACCGTCGATCTCCCTCCACTCCGTCGATCACCCTCACGCCGTTTCTCTAATTCCAGTCCATCGATCTCCCTCACGCCGCCTCTCTCATCCACTCTCTCGATTTCCACTGGCAGTGTGTCCAAACTCCCAAGGGCCTCAGGCTTAGCTATTCATCAGTGTAAGGATGTTTTTTTGATTCCTTATGATGTGCAAATGGATTTGGGGAAACAGAAGACTTTGATGGATAGCCCTTTGACGTGGAGCTCTACCCCTAATTCCTCACCTATGTCAAATCCTGGTTCAAATGATGAAAGCCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTCAGAGGGATATTACATATGAGGAGTTAATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGACGGGTTCACTAGGCTGAGGATATTCTTGTTTTCACATCCTGAACAAGATGGCTCTTTGCCCTTTGTGGATGGTGATGAGAGGGATACTGAAAGACGATATGTAGATGCTCTTAATAATTCGAATGACATGAATGATTTTGTTAGACAACAACAGCTAAATTCCCCTGCAATTAGTGGCATAGATGATATGCACGGGAATGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGCGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCCCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCCCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCCAGGCATCATGGTCCATATGATTCAAGAACGATGGGTGAATATCCATCTTCTCCATTTGCACGATACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAGCAAATGAATCACCAACATATGTATGAACATCAACCACAATATAACGAGAATATTGTATGGCTGCCAAATGGAACAACTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCTAGATGGGAATAGTTCTTGTGAACACTGTCGGGCAAATTTTCATCGGTATCAAACACACATGGAACAAGCTAATACGATAAATGGACTTCCCCCTGAATACCCTCAGAATAGAGAGGCCTTGATGCAGAAGGCAGACATGAAGTTCCATCATGGTATTTTTCCAAATGAGCAGAATATTAATGATCATCGATCTACTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACACCAGGTGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGGCTGGACGATTGAATGATCACTACCTTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACAAATTTTCATGATGAGGGATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCAGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCACTTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAAAAAATTTTGGGTATTGAGGGTGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCGCGGTTGGCCATGACAATCAACACTTAACAAGTTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCACCATTTATTCATGAAAAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCGCAACTGAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAGTTGTGCATGGGGAAGGAAATGGACACATGATTAACGATACAGGGAAAGTTGACATCTCTGAAGCACACATTGTTTCTCATCCCGGGCAAAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATGAACTCTGCAGTAGAAAATGGTGATGGCCTGAAACCTTCTGCAGAGACTCTTGAAAAGCCTAAACTATCAGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGAAAAGAGCAGCACTAGAAGTATCCGAAGAGGCAATGGTTGAAGAAACCGCTCAAAGGGGTCCTGATTCAATAGGAAAGAAAGAGACAACAAATGAGCAACATTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCTGAAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCGAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGATGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATCGATCGTCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTATGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTGTCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGATCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATAGACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCACGTAGGCAATGGGAATGATTTCACTTGGGATTCTGCCGTTGGAAGCGTACGCCATACAGTAACGATACAATACATATATATGTTGGTTCTGCTATAA | 3951 | 43.18 | MNLSRWKKRNSDGFLWSIQEQEDEIGRRILTWSKEIKGPIYSLSVRYKGVFPLADFPSLSFPPPSTIDTVISVLQFFLLSIFSSSSPHRLLLSSLTVDLPPLRRSPSRRFSNSSPSISLTPPLSSTLSISTGSVSKLPRASGLAIHQCKDVFLIPYDVQMDLGKQKTLMDSPLTWSSTPNSSPMSNPGSNDESPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQLNSPAISGIDDMHGNEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRTMGEYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTTSEESGFPGNILHGHGVLDGNSSCEHCRANFHRYQTHMEQANTINGLPPEYPQNREALMQKADMKFHHGIFPNEQNINDHRSTYNETPPHEKGWIMQHQVSVRGDDTRTHVSGAGRLNDHYLVDGSGSNFPPTQSNITDGYHASTNFHDEGFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPTYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQKILGIEGATGSEHLPGHVLKTNSTAVGHDNQHLTSLEHIQPHLDKINLVASPMQRSDSSSPFIHEKKMVAPFHPSQNPQLRAVSVVNEAMMMERKVVHGEGNGHMINDTGKVDISEAHIVSHPGQNNTDDTYSKVAPLESLNSTCMNSAVENGDGLKPSAETLEKPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETAQRGPDSIGKKETTNEQHSSNAHGEPELETESDNQSSEIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNRLHCWETTSTDMKEIHVGNGNDFTWDSAVGSVRHTVTIQYIYMLVLL | 1316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25531318 | 25544319 | - | CcPI632755_11g012970.1 | Cco11g1297 | 192533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1297 | 1316 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1123 | 1135 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | SMART | serkin_6 | 998 | 1267 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1085 | 1297 | - | - | |
Cco11g1297 | 1316 | MobiDBLite | consensus disorder prediction | 171 | 192 | - | - | |
Cco11g1297 | 1316 | CDD | STKc_MAP3K-like | 1004 | 1261 | - | - | |
Cco11g1297 | 1316 | Pfam | PB1 domain | 211 | 295 | IPR000270 | GO:0005515(InterPro) | |
Cco11g1297 | 1316 | SMART | PB1_new | 210 | 295 | IPR000270 | GO:0005515(InterPro) | |
Cco11g1297 | 1316 | PRINTS | Tyrosine kinase catalytic domain signature | 1117 | 1135 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | PRINTS | Tyrosine kinase catalytic domain signature | 1232 | 1254 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | PRINTS | Tyrosine kinase catalytic domain signature | 1080 | 1093 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | PRINTS | Tyrosine kinase catalytic domain signature | 1188 | 1210 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 215 | 297 | - | - | |
Cco11g1297 | 1316 | SUPERFAMILY | CAD & PB1 domains | 212 | 300 | - | - | |
Cco11g1297 | 1316 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 991 | 1085 | - | - | |
Cco11g1297 | 1316 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1004 | 1025 | IPR017441 | GO:0005524(InterPro) | |
Cco11g1297 | 1316 | MobiDBLite | consensus disorder prediction | 929 | 992 | - | - | |
Cco11g1297 | 1316 | CDD | PB1_UP2 | 199 | 295 | - | - | |
Cco11g1297 | 1316 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 177 | 1265 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco11g1297 | 1316 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 1086 | 1276 | - | - | |
Cco11g1297 | 1316 | Pfam | Protein tyrosine and serine/threonine kinase | 1000 | 1261 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1297 | 1316 | Gene3D | - | 214 | 297 | - | - | |
Cco11g1297 | 1316 | SUPERFAMILY | Protein kinase-like (PK-like) | 985 | 1259 | IPR011009 | - | |
Cco11g1297 | 1316 | Gene3D | Phosphorylase Kinase; domain 1 | 984 | 1084 | - | - | |
Cco11g1297 | 1316 | ProSiteProfiles | Protein kinase domain profile. | 998 | 1275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0407 | Cco-Chr5:3346886 | Cco11g1297 | Cco-Chr11:25531318 | 6.30E-143 | dispersed | |
Cco06g1388 | Cco-Chr6:24375725 | Cco11g1297 | Cco-Chr11:25531318 | 6.20E-140 | dispersed | |
Cco10g0669 | Cco-Chr10:9227074 | Cco11g1297 | Cco-Chr11:25531318 | 4.80E-30 | dispersed | |
Cco11g1297 | Cco-Chr11:25531318 | Cco11g1512 | Cco-Chr11:27937166 | 8.70E-48 | dispersed | |
Cco11g1297 | Cco-Chr11:25531318 | Cco03g0422 | Cco-Chr3:4527491 | 1.80E-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87245 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-61 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1297 | - | - | - | 0.0 |