Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1304 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGCGACGTCATAATGCTCATGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTTAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTCACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATCATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCCGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGGCTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTAAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTGAGATCTGCATACGTGGCTGCCAGATCATGAAAGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAGTATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTCTTTGTGGACTCAATTCCAATTGCCCCATCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1629 48.8 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLMLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCFRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGEICIRGCQIMKGYLNNKEATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVFFVDSIPIAPSGKILRKVLKAQLEAGAF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25655547 25662867 - CcPI632755_11g013040.1 Cco11g1304 192540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1304 542 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
Cco11g1304 542 CDD 4CL 22 533 - -
Cco11g1304 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
Cco11g1304 542 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Cco11g1304 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - GO:0016405(PANTHER)
Cco11g1304 542 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cco11g1304 542 Gene3D - 438 540 IPR045851 -
Cco11g1304 542 Gene3D - 4 437 IPR042099 -
Cco11g1304 542 Pfam AMP-binding enzyme 34 401 IPR000873 -
Cco11g1304 542 FunFam 4-coumarate--CoA ligase 2 439 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1266 Cco-Chr10:25399980 Cco11g1304 Cco-Chr11:25655547 1.50E-208 dispersed
Cco10g1993 Cco-Chr10:33441764 Cco11g1304 Cco-Chr11:25655547 5.10E-103 dispersed
Cco11g1304 Cco-Chr11:25655547 Cco11g1407 Cco-Chr11:26838992 4.70E-109 dispersed
Cco02g0809 Cco-Chr2:9044451 Cco11g1304 Cco-Chr11:25655547 3.60E-181 transposed
Cco10g0597 Cco-Chr10:7965574 Cco11g1304 Cco-Chr11:25655547 3.50E-23 transposed
Cco11g1304 Cco-Chr11:25655547 Cco06g1522 Cco-Chr6:25715960 5.60E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1304 K01904 - csv:101210868 973.385