Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1312 ATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTTGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCATGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCAGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTGTTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGAATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCTGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATAGTTCTTCATGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAAAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1077 41.04 MFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHHAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25877024 25882016 - CcPI632755_11g013120.1 Cco11g1312 192548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1312 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 140 - -
Cco11g1312 358 PANTHER WAT1-RELATED PROTEIN 1 328 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco11g1312 358 Pfam EamA-like transporter family 172 311 IPR000620 GO:0016020(InterPro)
Cco11g1312 358 Pfam EamA-like transporter family 5 130 IPR000620 GO:0016020(InterPro)
Cco11g1312 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 207 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1474 Cco-Chr6:25191103 Cco11g1312 Cco-Chr11:25877024 4.30E-85 dispersed
Cco11g1312 Cco-Chr11:25877024 Cco11g1620 Cco-Chr11:29020257 5.80E-55 dispersed
Cco11g1312 Cco-Chr11:25877024 Cco06g1473 Cco-Chr6:25184459 1.70E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1312 - - - 0.0