Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1312 ATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTTGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCATGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCAGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTGTTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGAATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCTGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATAGTTCTTCATGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAAAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1077 41.04 MFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHHAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25877024 25882016 - CcPI632755_11g013120.1 Cco11g1312 192548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1312 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 140 - -
Cco11g1312 358 PANTHER WAT1-RELATED PROTEIN 1 328 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco11g1312 358 Pfam EamA-like transporter family 172 311 IPR000620 GO:0016020(InterPro)
Cco11g1312 358 Pfam EamA-like transporter family 5 130 IPR000620 GO:0016020(InterPro)
Cco11g1312 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 207 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1312 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1474 Cco-Chr6:25191103 Cco11g1312 Cco-Chr11:25877024 4.30E-85 dispersed
Cco11g1312 Cco-Chr11:25877024 Cco11g1620 Cco-Chr11:29020257 5.80E-55 dispersed
Cco11g1312 Cco-Chr11:25877024 Cco06g1473 Cco-Chr6:25184459 1.70E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g750 . . . . . . . . . Cmo11g00429 . Cma12g00827 . Car12g00739 Sed08g0542 Cpe04g01274 . Bhi02g00827 Tan09g1621 Cmetu02g1685 . Hepe09g0531 . . Cla11g01236 Cam11g1297 Cec11g1317 Cco11g1312 Clacu11g1455 Cmu11g1277 Cre11g1698 . Cone16ag0385 . . . Csa02g00579 . Cme02g01012 . . . . . . . . Sed11g0509 . Cmo12g00832 . Cma11g00430 . . . Cpe07g00686 Bhi06g01320 Tan08g0778 Cmetu05g0105 . Hepe08g2173 . . Cla06g01441 Cam06g1595 Cec06g1656 Cco06g1649 Clacu06g1558 Cmu06g1512 Cre06g2320 Lsi11g00715 Csa01g01932 Chy02g02167 Cme05g01459
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g1180 . 1 755 Nodulin-like Gene Family AT4G19180 61.4 3.4e-251 864.8
Cco11g1651 . 75 335 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Cco09g2087 . 21 375 Nodulin-like Gene Family AT3G28050 59.7 2.5e-114 409.1
Cco09g2087 . 136 342 Nodulin-like Gene Family AT3G28080 50.2 9.6e-51 197.2
Cco10g0259 . 2 328 Nodulin-like Gene Family AT5G47470 61.6 5.5e-104 374.8
Cco01g0432 . 7 338 Nodulin-like Gene Family AT5G47470 58.3 1.4e-99 360.1
Cco09g2087 . 19 342 Nodulin-like Gene Family AT5G40230 54.0 3.6e-92 335.5
Cco09g2087 . 12 342 Nodulin-like Gene Family AT5G40240 52.3 1.2e-90 330.5
Cco10g1431 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 8.0e-84 307.8
Cco05g2103 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.2e-85 311.2
Cco08g1649 . 16 282 Nodulin-like Gene Family AT3G53210 57.7 1.5e-84 309.7
Cco04g1041 . 99 360 Nodulin-like Gene Family AT2G37450 60.5 7.5e-84 307.4
Cco07g0317 . 98 332 Nodulin-like Gene Family AT2G37450 57.0 1.2e-68 256.9
Cco07g0318 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Cco11g1620 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 3.0e-64 242.3
Cco08g0692 . 117 349 Nodulin-like Gene Family AT2G37450 50.9 5.1e-64 241.5
Cco04g1041 . 12 338 Nodulin-like Gene Family AT2G37460 67.9 5.3e-123 438.0
Cco07g0318 . 11 334 Nodulin-like Gene Family AT2G37460 57.7 2.0e-101 366.3
Cco07g0317 . 11 332 Nodulin-like Gene Family AT2G37460 57.5 2.0e-98 356.3
Cco11g1620 . 16 343 Nodulin-like Gene Family AT2G37460 55.2 1.0e-97 354.0
Cco08g0692 . 23 349 Nodulin-like Gene Family AT2G37460 50.6 6.7e-94 341.3
Cco04g0696 . 13 362 Nodulin-like Gene Family AT2G37460 50.7 7.4e-93 337.8
Cco09g2209 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 2.2e-92 336.3
Cco09g2207 . 10 326 Nodulin-like Gene Family AT2G37460 55.0 3.8e-89 325.5
Cco10g1627 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 1.5e-88 323.6
Cco11g1312 . 4 321 Nodulin-like Gene Family AT4G28040 50.5 7.3e-82 301.2
Cco08g1649 . 4 395 Nodulin-like Gene Family AT1G75500 72.5 5.0e-161 564.3
Cco05g2103 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 5.9e-154 540.8
Cco06g1649 . 7 333 Nodulin-like Gene Family AT1G75500 62.2 1.9e-115 412.9
Cco05g2779 . 1 366 Nodulin-like Gene Family AT1G60050 50.5 1.3e-94 343.6
Cco07g0318 . 8 361 Nodulin-like Gene Family AT2G39510 59.9 2.3e-118 422.5
Cco07g0317 . 12 341 Nodulin-like Gene Family AT2G39510 61.9 1.3e-113 406.8
Cco04g1041 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.2e-111 400.2
Cco09g2209 . 8 343 Nodulin-like Gene Family AT2G39510 57.1 7.3e-109 391.0
Cco09g2207 . 13 326 Nodulin-like Gene Family AT2G39510 58.5 2.1e-100 362.8
Cco11g1620 . 18 335 Nodulin-like Gene Family AT2G39510 57.3 2.6e-98 355.9
Cco04g0696 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 4.3e-93 338.6
Cco10g1627 . 15 349 Nodulin-like Gene Family AT2G39510 50.9 2.4e-91 332.8
Cco08g0692 . 22 277 Nodulin-like Gene Family AT4G08290 63.8 1.2e-87 320.1
Cco11g1620 . 14 263 Nodulin-like Gene Family AT4G08290 53.3 1.3e-73 273.5
Cco11g1620 . 12 355 Nodulin-like Gene Family AT4G08300 66.6 2.1e-124 442.6
Cco08g0692 . 27 378 Nodulin-like Gene Family AT4G08300 51.0 3.9e-94 342.0
Cco04g1041 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 9.6e-85 310.8
Cco02g0073 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.4e-77 286.6
Cco04g1325 . 1 236 Nodulin-like Gene Family AT5G64700 52.9 2.0e-60 229.6
Cco02g0072 . 3 207 Nodulin-like Gene Family AT5G64700 54.8 1.9e-50 196.4
Cco11g1312 . 4 356 Nodulin-like Gene Family AT4G30420 53.2 1.8e-99 359.8
Cco11g1361 . 6 404 Nodulin-like Gene Family AT5G07050 63.7 2.3e-140 495.7
Cco10g1627 . 10 342 Nodulin-like Gene Family AT5G07050 68.3 7.5e-128 454.1
Cco04g0696 . 10 339 Nodulin-like Gene Family AT5G07050 64.9 7.3e-123 437.6
Cco11g1620 . 18 336 Nodulin-like Gene Family AT5G07050 52.4 1.9e-94 343.2
Cco04g1041 . 11 332 Nodulin-like Gene Family AT5G07050 52.1 7.9e-93 337.8
Cco09g2209 . 8 331 Nodulin-like Gene Family AT5G07050 51.4 1.0e-87 320.9
Cco04g0696 . 13 357 Nodulin-like Gene Family AT3G56620 58.6 2.0e-106 382.9
Cco11g1361 . 14 338 Nodulin-like Gene Family AT3G56620 57.0 8.2e-100 360.9
Cco05g2779 . 1 372 Nodulin-like Gene Family AT1G70260 54.9 3.4e-106 382.1
Cco01g1164 . 3 331 Nodulin-like Gene Family AT1G09380 61.5 1.0e-110 397.1
Cco02g1601 . 1 332 Nodulin-like Gene Family AT1G09380 58.1 3.9e-110 395.2
Cco04g0696 . 13 352 Nodulin-like Gene Family AT2G40900 60.9 1.5e-109 393.3
Cco10g1627 . 12 347 Nodulin-like Gene Family AT2G40900 56.0 2.7e-106 382.5
Cco11g1361 . 14 333 Nodulin-like Gene Family AT2G40900 57.5 5.9e-101 364.8
Cco06g1649 . 1 351 Nodulin-like Gene Family AT3G18200 68.5 3.2e-128 455.3
Cco08g1649 . 16 360 Nodulin-like Gene Family AT3G18200 57.4 4.8e-108 388.3
Cco05g2103 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Cco11g1620 . 12 355 Nodulin-like Gene Family AT1G44800 64.6 2.0e-122 436.0
Cco08g0692 . 27 369 Nodulin-like Gene Family AT1G44800 51.3 1.6e-95 346.7
Cco04g0696 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 9.2e-88 320.9
Cco11g1651 . 159 429 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Cco11g1620 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 6.3e-115 411.0
Cco08g0692 . 26 327 Nodulin-like Gene Family AT1G21890 50.5 1.1e-87 320.5
Cco10g1627 . 15 318 Nodulin-like Gene Family AT1G21890 53.2 3.6e-86 315.5
Cco07g1312 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 3.4e-187 651.7
Cco07g1201 . 4 417 Nodulin-like Gene Family AT4G19450 66.0 8.3e-146 513.8
Cco06g0062 . 44 442 Nodulin-like Gene Family AT4G19450 57.7 2.7e-128 455.7
Cco06g1851 . 7 538 Nodulin-like Gene Family AT1G74780 58.6 1.2e-178 623.2
Cco06g1854 . 13 481 Nodulin-like Gene Family AT1G74780 58.8 3.9e-156 548.5
Cco06g1852 . 6 376 Nodulin-like Gene Family AT1G74780 52.3 3.6e-101 365.9
Cco06g1853 . 1 128 Nodulin-like Gene Family AT1G74780 67.2 3.5e-48 189.9
Cco02g1280 . 9 540 Nodulin-like Gene Family AT4G34950 70.0 4.8e-221 764.2
Cco02g0460 . 10 514 Nodulin-like Gene Family AT4G34950 66.5 1.6e-203 706.1
Cco11g0731 . 6 592 Nodulin-like Gene Family AT5G14120 68.8 1.5e-233 805.8
Cco02g1280 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 1.2e-151 533.1
Cco02g0460 . 5 368 Nodulin-like Gene Family AT2G16660 67.4 1.9e-139 492.7
Cco05g2390 . 1 583 Nodulin-like Gene Family AT2G39210 68.2 1.5e-228 789.3
Cco08g0923 . 27 603 Nodulin-like Gene Family AT2G39210 62.7 1.1e-210 729.9
Cco05g2391 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 6.9e-202 700.7
Cco10g1983 . 1 579 Nodulin-like Gene Family AT2G39210 59.3 1.4e-194 676.4
Cco03g0274 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 5.7e-188 654.4
Cco04g1147 . 18 579 Nodulin-like Gene Family AT2G39210 56.4 9.4e-183 637.1
Cco04g0411 . 12 530 Nodulin-like Gene Family AT2G39210 52.4 5.9e-153 538.1
Cco03g0261 . 16 556 Nodulin-like Gene Family AT2G39210 51.0 1.0e-152 537.3
Cco10g1986 . 15 431 Nodulin-like Gene Family AT2G39210 50.7 6.2e-126 448.4
Cco07g1201 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.1e-147 519.6
Cco06g0062 . 50 589 Nodulin-like Gene Family AT3G01630 50.4 1.7e-141 500.0
Cco11g0731 . 6 429 Nodulin-like Gene Family AT3G01930 69.2 6.8e-167 583.9
Cco06g1851 . 10 537 Nodulin-like Gene Family AT1G18940 54.7 1.6e-165 579.7
Cco06g1854 . 7 481 Nodulin-like Gene Family AT1G18940 54.7 3.9e-148 521.9
Cco06g1852 . 3 376 Nodulin-like Gene Family AT1G18940 50.1 4.0e-97 352.4
Cco06g1853 . 1 126 Nodulin-like Gene Family AT1G18940 62.7 6.8e-44 175.6
Cco06g1851 . 6 539 Nodulin-like Gene Family AT2G34350 56.7 1.2e-160 563.5
Cco06g1854 . 11 477 Nodulin-like Gene Family AT2G34350 55.4 2.2e-143 506.1
Cco06g1852 . 8 374 Nodulin-like Gene Family AT2G34350 51.9 1.3e-98 357.5
Cco06g1853 . 1 128 Nodulin-like Gene Family AT2G34350 64.1 1.8e-41 167.5
Cco03g0274 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 4.0e-223 771.2
Cco05g2390 . 10 568 Nodulin-like Gene Family AT2G28120 61.8 6.4e-197 684.1
Cco08g0923 . 23 587 Nodulin-like Gene Family AT2G28120 58.9 1.8e-186 649.4
Cco10g1983 . 19 555 Nodulin-like Gene Family AT2G28120 60.3 3.8e-181 631.7
Cco03g0261 . 13 560 Nodulin-like Gene Family AT2G28120 57.3 3.9e-178 621.7
Cco05g2391 . 9 563 Nodulin-like Gene Family AT2G28120 57.7 2.8e-176 615.5
Cco04g1147 . 16 573 Nodulin-like Gene Family AT2G28120 55.8 1.0e-170 597.0
Cco03g0271 . 8 581 Nodulin-like Gene Family AT2G28120 54.1 1.4e-167 586.6
Cco03g0269 . 2 544 Nodulin-like Gene Family AT2G28120 51.4 5.7e-161 564.7
Cco03g0270 . 3 576 Nodulin-like Gene Family AT2G28120 50.2 2.2e-157 552.7
Cco04g0411 . 1 535 Nodulin-like Gene Family AT2G28120 51.7 3.5e-150 528.9
Cco07g1201 . 4 570 Nodulin-like Gene Family AT1G31470 56.5 5.9e-166 581.3
Cco06g0062 . 50 596 Nodulin-like Gene Family AT1G31470 56.5 1.6e-163 573.2
Cco09g0964 . 27 216 Nodulin-like Gene Family AT1G76800 76.8 2.4e-71 265.4
Cco08g0831 . 17 214 Nodulin-like Gene Family AT1G76800 69.7 6.6e-69 257.3
Cco09g1586 . 10 202 Nodulin-like Gene Family AT1G76800 63.2 2.1e-59 225.7
Cco09g1586 . 9 202 Nodulin-like Gene Family AT3G25190 65.8 9.3e-64 240.4
Cco08g0831 . 23 214 Nodulin-like Gene Family AT3G25190 63.0 1.1e-59 226.9
Cco09g0964 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 4.5e-58 221.5
Cco08g0831 . 20 214 Nodulin-like Gene Family AT1G21140 75.9 1.2e-73 273.1
Cco09g0964 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 6.1e-70 260.8
Cco09g1586 . 7 202 Nodulin-like Gene Family AT1G21140 62.2 1.9e-63 239.2
Cco08g0831 . 20 211 Nodulin-like Gene Family AT3G43630 78.1 4.5e-73 271.2
Cco09g0964 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 1.2e-68 256.5
Cco09g1586 . 7 199 Nodulin-like Gene Family AT3G43630 62.2 4.4e-60 228.0
Cco08g0831 . 20 214 Nodulin-like Gene Family AT3G43660 74.9 1.7e-72 269.2
Cco09g0964 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 6.0e-70 260.8
Cco09g1586 . 7 202 Nodulin-like Gene Family AT3G43660 61.7 2.7e-62 235.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002385 0 3 0 0 0 1 3 1 1 0 1 1 3 1 1 3 1 2 3 1 1 4 3 5 4 1 2 7 5 1 59