Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1357 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAAGCTAACCCTGACGTTGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGTGAAGCCAATCAAGCTATCCAAAACTTCGATCTTAATGCCGATGTCATCGCCAGCGAAGACTCCAAGAGTTTACCACCACCACCAGCAGTGTCAGATGTGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 852 47.42 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQANPDVDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNADVIASEDSKSLPPPPAVSDVPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26400514 26405729 + CcPI632755_11g013570.1 Cco11g1357 192593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1357 283 MobiDBLite consensus disorder prediction 174 190 - -
Cco11g1357 283 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cco11g1357 283 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Cco11g1357 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 173 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cco11g1357 283 MobiDBLite consensus disorder prediction 90 250 - -
Cco11g1357 283 FunFam dr1-associated corepressor homolog 1 86 - -
Cco11g1357 283 MobiDBLite consensus disorder prediction 90 132 - -
Cco11g1357 283 MobiDBLite consensus disorder prediction 159 173 - -
Cco11g1357 283 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2412 Cco-Chr2:36514004 Cco11g1357 Cco-Chr11:26400514 4.10E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60283 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1357 K21752 - csv:101209714 471.085