Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1357 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAAGCTAACCCTGACGTTGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGTGAAGCCAATCAAGCTATCCAAAACTTCGATCTTAATGCCGATGTCATCGCCAGCGAAGACTCCAAGAGTTTACCACCACCACCAGCAGTGTCAGATGTGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 852 47.42 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQANPDVDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNADVIASEDSKSLPPPPAVSDVPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26400514 26405729 + CcPI632755_11g013570.1 Cco11g1357 192593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1357 283 MobiDBLite consensus disorder prediction 174 190 - -
Cco11g1357 283 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cco11g1357 283 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Cco11g1357 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 173 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cco11g1357 283 MobiDBLite consensus disorder prediction 90 250 - -
Cco11g1357 283 FunFam dr1-associated corepressor homolog 1 86 - -
Cco11g1357 283 MobiDBLite consensus disorder prediction 90 132 - -
Cco11g1357 283 MobiDBLite consensus disorder prediction 159 173 - -
Cco11g1357 283 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1357 K21752 - - csv:101209714 471.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2412 Cco-Chr2:36514004 Cco11g1357 Cco-Chr11:26400514 4.10E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1989 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.0e-89 323.6
Cco09g1471 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Cco09g1471 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cco06g1989 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Cco09g1471 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Cco06g1989 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cco06g1989 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Cco06g1989 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.4e-81 297.4
Cco09g1471 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.0
Cco09g1471 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Cco06g1989 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.1e-50 194.9
Cco11g1357 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.0 6.9e-62 234.6
Cco08g1160 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.9e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60283 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cco TF