Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1357 | ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAAGCTAACCCTGACGTTGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGTGAAGCCAATCAAGCTATCCAAAACTTCGATCTTAATGCCGATGTCATCGCCAGCGAAGACTCCAAGAGTTTACCACCACCACCAGCAGTGTCAGATGTGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA | 852 | 47.42 | MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQANPDVDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNADVIASEDSKSLPPPPAVSDVPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26400514 | 26405729 | + | CcPI632755_11g013570.1 | Cco11g1357 | 192593 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1357 | 283 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
Cco11g1357 | 283 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - | |
Cco11g1357 | 283 | Gene3D | Histone, subunit A | 1 | 86 | IPR009072 | GO:0046982(InterPro) | |
Cco11g1357 | 283 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 4 | 173 | IPR050568 | GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER) | |
Cco11g1357 | 283 | MobiDBLite | consensus disorder prediction | 90 | 250 | - | - | |
Cco11g1357 | 283 | FunFam | dr1-associated corepressor homolog | 1 | 86 | - | - | |
Cco11g1357 | 283 | MobiDBLite | consensus disorder prediction | 90 | 132 | - | - | |
Cco11g1357 | 283 | MobiDBLite | consensus disorder prediction | 159 | 173 | - | - | |
Cco11g1357 | 283 | SUPERFAMILY | Histone-fold | 4 | 89 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2412 | Cco-Chr2:36514004 | Cco11g1357 | Cco-Chr11:26400514 | 4.10E-53 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60283 | PF00808 | CBFD_NFYB_HMF | 2.10E-19 | CL0012 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1357 | K21752 | - | csv:101209714 | 471.085 |