Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1361 ATGGGAAAGCTTAGATTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTATGTCCTCGTCGTTTATCGACATGCTTTCGCTACCGCTTCCATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGCTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAAGTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCCGAGCACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCCGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATATTAATAGTAATAATATTGCAAATAATGTTGAAGCTAATGAGATTGTGACCATGGCACCCAATAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCCATTAAACCCAACCAAATCCCAAGAGAATAA 1236 39.24 MGKLRLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMLMTLYKGPLLQMAWSKNSHITNSNESSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIAVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNININSNNIANNVEANEIVTMAPNKLSSNNNSIFISMPALENPIKPNQIPRE 411
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 26446369 26450335 - CcPI632755_11g013610.1 Cco11g1361 192597
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1361 411 PANTHER WAT1-RELATED PROTEIN 20 348 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco11g1361 411 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020(InterPro)
Cco11g1361 411 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020(InterPro)
Cco11g1361 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Cco11g1361 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0712 Cco-Chr6:7971690 Cco11g1361 Cco-Chr11:26446369 7.80E-68 dispersed
Cco06g1649 Cco-Chr6:27089218 Cco11g1361 Cco-Chr11:26446369 6.50E-62 dispersed
Cco07g1043 Cco-Chr7:23854877 Cco11g1361 Cco-Chr11:26446369 7.90E-50 dispersed
Cco10g1431 Cco-Chr10:27395446 Cco11g1361 Cco-Chr11:26446369 7.20E-37 dispersed
Cco10g1432 Cco-Chr10:27411138 Cco11g1361 Cco-Chr11:26446369 1.50E-42 dispersed
Cco10g1625 Cco-Chr10:29618490 Cco11g1361 Cco-Chr11:26446369 1.70E-08 dispersed
Cco10g1626 Cco-Chr10:29619340 Cco11g1361 Cco-Chr11:26446369 3.10E-07 dispersed
Cco10g1627 Cco-Chr10:29623308 Cco11g1361 Cco-Chr11:26446369 5.80E-125 dispersed
Cco11g1361 Cco-Chr11:26446369 Cco11g1620 Cco-Chr11:29020257 3.60E-93 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1361 - - - 0.0