Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g1361 | ATGGGAAAGCTTAGATTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTATGTCCTCGTCGTTTATCGACATGCTTTCGCTACCGCTTCCATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGCTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAAGTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCCGAGCACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCCGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATATTAATAGTAATAATATTGCAAATAATGTTGAAGCTAATGAGATTGTGACCATGGCACCCAATAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCCATTAAACCCAACCAAATCCCAAGAGAATAA | 1236 | 39.24 | MGKLRLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMLMTLYKGPLLQMAWSKNSHITNSNESSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIAVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNININSNNIANNVEANEIVTMAPNKLSSNNNSIFISMPALENPIKPNQIPRE | 411 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26446369 | 26450335 | - | CcPI632755_11g013610.1 | Cco11g1361 | 192597 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g1361 | 411 | PANTHER | WAT1-RELATED PROTEIN | 20 | 348 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cco11g1361 | 411 | Pfam | EamA-like transporter family | 190 | 329 | IPR000620 | GO:0016020(InterPro) | |
| Cco11g1361 | 411 | Pfam | EamA-like transporter family | 19 | 159 | IPR000620 | GO:0016020(InterPro) | |
| Cco11g1361 | 411 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 52 | 162 | - | - | |
| Cco11g1361 | 411 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 334 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g0712 | Cco-Chr6:7971690 | Cco11g1361 | Cco-Chr11:26446369 | 7.80E-68 | dispersed | |
| Cco06g1649 | Cco-Chr6:27089218 | Cco11g1361 | Cco-Chr11:26446369 | 6.50E-62 | dispersed | |
| Cco07g1043 | Cco-Chr7:23854877 | Cco11g1361 | Cco-Chr11:26446369 | 7.90E-50 | dispersed | |
| Cco10g1431 | Cco-Chr10:27395446 | Cco11g1361 | Cco-Chr11:26446369 | 7.20E-37 | dispersed | |
| Cco10g1432 | Cco-Chr10:27411138 | Cco11g1361 | Cco-Chr11:26446369 | 1.50E-42 | dispersed | |
| Cco10g1625 | Cco-Chr10:29618490 | Cco11g1361 | Cco-Chr11:26446369 | 1.70E-08 | dispersed | |
| Cco10g1626 | Cco-Chr10:29619340 | Cco11g1361 | Cco-Chr11:26446369 | 3.10E-07 | dispersed | |
| Cco10g1627 | Cco-Chr10:29623308 | Cco11g1361 | Cco-Chr11:26446369 | 5.80E-125 | dispersed | |
| Cco11g1361 | Cco-Chr11:26446369 | Cco11g1620 | Cco-Chr11:29020257 | 3.60E-93 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g1361 | - | - | - | 0.0 |