Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1390 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAACATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCACCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCTTCTAACGCCGCCGCCCCTCCTCCTCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCTAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCCGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGACCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1548 52.97 MELTDMQQSNKQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAAAAGGGGGGGGGGGAPPFMASISSLVTLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26691479 26693026 - CcPI632755_11g013900.1 Cco11g1390 192626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1390 515 MobiDBLite consensus disorder prediction 126 145 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 126 162 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 487 515 - -
Cco11g1390 515 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 101 480 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco11g1390 515 MobiDBLite consensus disorder prediction 1 38 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 146 162 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 1 114 - -
Cco11g1390 515 Pfam TCP family transcription factor 148 276 IPR017887 -
Cco11g1390 515 MobiDBLite consensus disorder prediction 311 351 - -
Cco11g1390 515 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
Cco11g1390 515 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1830 Cco-Chr1:30897842 Cco11g1390 Cco-Chr11:26691479 4.50E-34 dispersed
Cco02g1531 Cco-Chr2:27943749 Cco11g1390 Cco-Chr11:26691479 3.90E-29 dispersed
Cco06g0196 Cco-Chr6:2054896 Cco11g1390 Cco-Chr11:26691479 5.20E-27 dispersed
Cco06g1829 Cco-Chr6:28593417 Cco11g1390 Cco-Chr11:26691479 2.10E-37 dispersed
Cco11g1390 Cco-Chr11:26691479 Cco05g2708 Cco-Chr5:34968929 9.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60284 PF03634 TCP 6.50E-39 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1390 - - - 0.0