Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1390 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAACATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCACCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCTTCTAACGCCGCCGCCCCTCCTCCTCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCTAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCCGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGACCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1548 52.97 MELTDMQQSNKQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAAAAGGGGGGGGGGGAPPFMASISSLVTLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26691479 26693026 - CcPI632755_11g013900.1 Cco11g1390 192626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1390 515 MobiDBLite consensus disorder prediction 126 145 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 126 162 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 487 515 - -
Cco11g1390 515 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 101 480 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco11g1390 515 MobiDBLite consensus disorder prediction 1 38 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 146 162 - -
Cco11g1390 515 MobiDBLite consensus disorder prediction 1 114 - -
Cco11g1390 515 Pfam TCP family transcription factor 148 276 IPR017887 -
Cco11g1390 515 MobiDBLite consensus disorder prediction 311 351 - -
Cco11g1390 515 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
Cco11g1390 515 MobiDBLite consensus disorder prediction 90 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1390 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1830 Cco-Chr1:30897842 Cco11g1390 Cco-Chr11:26691479 4.50E-34 dispersed
Cco02g1531 Cco-Chr2:27943749 Cco11g1390 Cco-Chr11:26691479 3.90E-29 dispersed
Cco06g0196 Cco-Chr6:2054896 Cco11g1390 Cco-Chr11:26691479 5.20E-27 dispersed
Cco06g1829 Cco-Chr6:28593417 Cco11g1390 Cco-Chr11:26691479 2.10E-37 dispersed
Cco11g1390 Cco-Chr11:26691479 Cco05g2708 Cco-Chr5:34968929 9.30E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0861 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cco02g1531 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cco06g0018 . 59 343 TCP Transcription Factor Family AT2G45680 53.8 2.5e-66 249.6
Cco05g2708 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.5e-41 165.2
Cco01g1830 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cco11g1390 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cco11g1390 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cco05g1567 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cco02g1531 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cco01g0861 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Cco11g1390 . 147 388 TCP Transcription Factor Family AT1G35560 50.4 1.7e-43 173.7
Cco07g1729 . 43 183 TCP Transcription Factor Family AT3G02150 58.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60284 PF03634 TCP 6.50E-39 No_clan Cco TF