Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1392 ATGGACGTAGCGGTTCGAGGAGGGGATAATGAAACGGTTGCATTCAAGAGAAGACCGGTCCAGCAATACCCAGCGGCCAGCAGACTAAACCTGCGACCCATTGTGAAGAACAAGTCTCCTCCTGTCAAGTGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCGACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTCCAGAGGATGCATTAAAGGCATTAAAGGAGAAGGCAAAACAGTCAGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAAGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCATATTCACGGGGAGAGGCAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGGCACTTCCTTATTCATACTGGTGAAAGAGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCCCATATGAAAACGCATTCACAAGAGAACTACCATATTTGTCCGTACGCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAATCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTCAAATATACACCGCCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCGTCATCGGATCGTCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTTGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGGTAGAAGCCAGTGATCAAGATGGCTATGGCGGAAAACGCGCAAATGTCAAAAACCAGAAACAGAACAAACCTAAACCAAACTTGAAGTTACCGCCTTCAAAAATGTCACAGCGAAAAGGCATGACGACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCAGTTAAAGAAGAAAACTACGAGGAAGAAGATAGCGAAGAAACGGAGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAATATGAAGATTAA 1173 43.9 MDVAVRGGDNETVAFKRRPVQQYPAASRLNLRPIVKNKSPPVKWIKEWVPQDVVATGGKCFLLKWVPEDALKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEVEASDQDGYGGKRANVKNQKQNKPKPNLKLPPSKMSQRKGMTTPSPAPMSAVKKSWPVKEENYEEEDSEETEEEDRENVEEGWRYAENEDDDEETEYED 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26718588 26723071 + CcPI632755_11g013920.1 Cco11g1392 192628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1392 390 ProSitePatterns Zinc finger C2H2 type domain signature. 98 120 IPR013087 -
Cco11g1392 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 154 IPR013087 -
Cco11g1392 390 SUPERFAMILY beta-beta-alpha zinc fingers 179 212 IPR036236 -
Cco11g1392 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 125 IPR013087 -
Cco11g1392 390 SMART c2h2final6 125 149 IPR013087 -
Cco11g1392 390 SMART c2h2final6 248 273 IPR013087 -
Cco11g1392 390 SMART c2h2final6 96 120 IPR013087 -
Cco11g1392 390 SMART c2h2final6 155 179 IPR013087 -
Cco11g1392 390 SMART c2h2final6 185 209 IPR013087 -
Cco11g1392 390 SUPERFAMILY beta-beta-alpha zinc fingers 243 271 IPR036236 -
Cco11g1392 390 MobiDBLite consensus disorder prediction 375 390 - -
Cco11g1392 390 Pfam Zinc finger, C2H2 type 98 120 IPR013087 -
Cco11g1392 390 Pfam Zinc finger, C2H2 type 155 179 IPR013087 -
Cco11g1392 390 Pfam Zinc finger, C2H2 type 185 209 IPR013087 -
Cco11g1392 390 Gene3D Classic Zinc Finger 96 121 - -
Cco11g1392 390 Gene3D Classic Zinc Finger 153 180 - -
Cco11g1392 390 Gene3D Classic Zinc Finger 122 152 - -
Cco11g1392 390 FunFam Putative zinc finger protein 143 122 152 - -
Cco11g1392 390 FunFam Zinc finger protein 410 153 180 - -
Cco11g1392 390 MobiDBLite consensus disorder prediction 353 368 - -
Cco11g1392 390 FunFam Zinc finger transcription factor YY1 223 290 - -
Cco11g1392 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 214 IPR013087 -
Cco11g1392 390 ProSitePatterns Zinc finger C2H2 type domain signature. 250 273 IPR013087 -
Cco11g1392 390 Gene3D Classic Zinc Finger 220 290 - -
Cco11g1392 390 Gene3D Classic Zinc Finger 181 210 - -
Cco11g1392 390 MobiDBLite consensus disorder prediction 275 390 - -
Cco11g1392 390 FunFam zinc finger transcription factor YY1 182 213 - -
Cco11g1392 390 ProSitePatterns Zinc finger C2H2 type domain signature. 157 179 IPR013087 -
Cco11g1392 390 MobiDBLite consensus disorder prediction 222 246 - -
Cco11g1392 390 MobiDBLite consensus disorder prediction 225 239 - -
Cco11g1392 390 ProSitePatterns Zinc finger C2H2 type domain signature. 187 210 IPR013087 -
Cco11g1392 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Cco11g1392 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 184 IPR013087 -
Cco11g1392 390 SUPERFAMILY beta-beta-alpha zinc fingers 136 189 IPR036236 -
Cco11g1392 390 FunFam zinc finger transcription factor YY1 96 121 - -
Cco11g1392 390 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 78 372 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Cco11g1392 390 SUPERFAMILY beta-beta-alpha zinc fingers 99 149 IPR036236 -
Cco11g1392 390 ProSitePatterns Zinc finger C2H2 type domain signature. 127 149 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60285 PF00096 zf-C2H2 0.0048 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1392 - - - 0.0