Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1407 ATGGCTACTTGCATACGAGATTTGGTAGAAGAAGAGGAACATATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGATAATATCACACTGCCGGAGTTTGTACTTCAAAATGCTGAATCATATGCTGAAAATGTGGCATTTGTGGAAGCCGTGAGTGGAAAGGCTTACACTTACCGCGAAGTTGTGAGAGACATAAATAGATTTTCCAAGGCCTTGTGCTCTCTGAGGTTAAAGAAGGGGCAGGTAGTTATTGTTGTTCTACCCAATGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCCGCTCATATATCAGAAATCAAAAAGCAGGTGGAGGTAGCAGAAGCCAAACTTGTCGTCACGAACAGCGCAAACTTTGAAAAGGTGAAGGAATTAAAGCTACCAGTGATCTTATTAGGGGAGGAACTAATTGAAGGTTCCATTAATTGGCACAAACTGCTTGAAGCTGCAGACCGTGCAGGCAACAATTTTGTTAAAGAAGATATTAAGCAGACTGATTTATGTGCCCTCCCTTTCTCATCAGGCACCACAGGGGTTTCCAAAGGTGTTATGCTAACTCACCGAAATCTAATAGCTAATTTGTGTTCGACTCTCTCCGGTGTCCCAAAAGAAATAGAGGGCAAGGTCACGACATTAGGCCTCATTCCGTTCTTCCATATTTACGGGATCACTGGAATATGTTGTGCTGCACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTCATTAATGCCCTCTTAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCCTGGCTTTGGTTAAGAATCCTATTGTTGAAGAATTTGATCTTAGCGGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCACTCGCACCCGAAGTTCAAACTGCCTTCGAAAGAAAGTTCCCAGGCGTGGACATTCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACTCTCAACTATGGAAGTATGGGCAAAGATAATCTCACTGCAAAGAAAAACACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGATCCAGACAGCGGAAGGTCTCTGCCGAAGAACACTCCGGGTGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAAGGTTACTACAAAAATGAAGAGGAGACTTCAAGGACGATCGATAACAAAGGCTGGATGCACACTGGGGACATTGGATACATCGATGACGATGGCGACGTGTTTATTGTGGATCGTATCAAGGAATTGATCAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTGCTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACGAAGAAGCCGGTGAGATCCCAGCAGCAAGTGTCGTGATGGCTCCGAATTCGAAAGAAACTGAAGATGAAATAATCAAACATATTGCCTCAAATGTTGCACATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCCAAGTCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGCTCGAAAAGATTCGAGCTGAATCCTCCTCTTAG 1653 44.4 MATCIRDLVEEEEHIFRSQLPEVQVPDNITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDINRFSKALCSLRLKKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVAEAKLVVTNSANFEKVKELKLPVILLGEELIEGSINWHKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLIANLCSTLSGVPKEIEGKVTTLGLIPFFHIYGITGICCAALRNKGKVVVMGRFDLRTFINALLTQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPEVQTAFERKFPGVDIQEAYGLTEHSCITLNYGSMGKDNLTAKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLAHPSIEDAAVVPLPDEEAGEIPAASVVMAPNSKETEDEIIKHIASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMLEKIRAESSS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26838992 26841269 + CcPI632755_11g014070.1 Cco11g1407 192643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1407 550 Gene3D - 442 544 IPR045851 -
Cco11g1407 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Cco11g1407 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Cco11g1407 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Cco11g1407 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Cco11g1407 550 CDD 4CL 25 534 - -
Cco11g1407 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Cco11g1407 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Cco11g1407 550 SUPERFAMILY Acetyl-CoA synthetase-like 20 543 - -
Cco11g1407 550 Gene3D - 13 441 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1304 Cco-Chr11:25655547 Cco11g1407 Cco-Chr11:26838992 4.70E-109 dispersed
Cco11g1407 Cco-Chr11:26838992 Cco11g1628 Cco-Chr11:29082873 9.30E-20 dispersed
Cco01g0468 Cco-Chr1:4568614 Cco11g1407 Cco-Chr11:26838992 1.90E-43 transposed
Cco04g2306 Cco-Chr4:36583898 Cco11g1407 Cco-Chr11:26838992 1.30E-26 transposed
Cco11g1407 Cco-Chr11:26838992 Cco05g1735 Cco-Chr5:25701367 7.70E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1407 K01904 - csv:101220731 988.023