Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1408 ATGCAAAGAAAGATGAAGAGAGGTTTGGTGGTGGTGGTGGTGGTGGTGGTTTGTTTATTGGGAAGTAGCTGGGTGGGAAAGGCAGAAGAAGAGAATTTGAAGGAGGGTTGCAGCAGTGATTTTGAGAAAGTGGTGAGTTGCTTCGAGTACGCGACGGGGAAGGCGGCGGGGCCGAGTAAGGAGTGCTGTGACTCAATTGAAGGTATAAAAGAAAGCAAGCCAAAATGCTTGTGTTTCTTCATACAGCAGACTCATAATGGAAATCAGCAGATTAAGAGCTTGGGCATTCAAGAGATTAAGCTTCTTCAGCTTCCTTCTGTTTGTCACTTGAAAAACTCTAGCGTTAGCTATTGCCCTAAGCTTCTGGGGCTACCCGCAAATTCACCCGACGCTGCTATTTTTAGCAATACAACAACACCAGCGACGCCGGCGTCCTCAACGACGACGAGGACAAGTCCCGACGGCAGTGGCGGAAGTAACATAGTAGCCAATTCTCCGGCCGGACTGATGGCGGTGGCGATGGCGGTCGTGTTTTTCACAGCCTTCCTTTCGCCGATCACGCGTGAGGCGAATTGGGCCGGACAGAGGCTCACTTATACTGCACCGTATAAGAAACGAACAAATTCTGGCAGCCCACTTGCGCTCATTCACGCAACAAAACGGCGTTCGTACGCCCTTTTACCCGACGAGCATCGCCGTTTCCGACTGAAAAAAAGATCCACGCAGCTATTCCGAGTCCAAGAACAAGATCTCTCCGTCATCGTCTTCCTGATAGGTCGCAATATGTCCCAGGTTGATAGCAGGAATTCCTCTGCGGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGCCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCTGCTGATCATAATTCTAAATCTGCTGCCAAGCCCATTCAAGCTCCTCAGGGTTACTCCTATTCTGCCCCTTACATGGGGTCAGGTGCACCCTCTTCAATGTATCCTGGTGTACCGCCATATGGTTCTTCCATATTCAATGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTATGGCAGCCGGTTTTCTGTGGGCAGCCCCTACAGACCCTTGCACTTATCTGGGCCTGCACCTTATTCAAGTGGATCTATGATGGGAAATAGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGTGCCATGGGTCCAAGGCCTGGTTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGACACTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGGTCACAGGGTTCCAAAAATGACAAAAGTTCTAAACAAAAGACGCCAGAGGGTAGCTGGAAATGTGAGAAATGTAACAACATAAATTATCCATTCCGAACCAAGTGCAACAGACAAAATTGTGGAGCAGACAAGCCAGCGGATTCAGAGAAATCCCCATCACCAGCACAAGATGAAAATGATCAGTGA 1641 48.02 MQRKMKRGLVVVVVVVVCLLGSSWVGKAEEENLKEGCSSDFEKVVSCFEYATGKAAGPSKECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNTTTPATPASSTTTRTSPDGSGGSNIVANSPAGLMAVAMAVVFFTAFLSPITREANWAGQRLTYTAPYKKRTNSGSPLALIHATKRRSYALLPDEHRRFRLKKRSTQLFRVQEQDLSVIVFLIGRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSVGSPYRPLHLSGPAPYSSGSMMGNSAVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKGADTTRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADSEKSPSPAQDENDQ 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26846698 26854597 - CcPI632755_11g014080.1 Cco11g1408 192644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1408 546 MobiDBLite consensus disorder prediction 134 159 - -
Cco11g1408 546 MobiDBLite consensus disorder prediction 272 286 - -
Cco11g1408 546 CDD AAI_LTSS 46 110 - -
Cco11g1408 546 MobiDBLite consensus disorder prediction 481 506 - -
Cco11g1408 546 Gene3D - 491 532 - -
Cco11g1408 546 Gene3D - 275 315 - -
Cco11g1408 546 Gene3D - 445 486 - -
Cco11g1408 546 SUPERFAMILY Ran binding protein zinc finger-like 449 486 IPR036443 -
Cco11g1408 546 SMART zf_4 502 528 IPR001876 -
Cco11g1408 546 SMART zf_4 285 311 IPR001876 -
Cco11g1408 546 SMART zf_4 456 482 IPR001876 -
Cco11g1408 546 FunFam ranBP2-type zinc finger protein At1g67325-like 276 315 - -
Cco11g1408 546 SUPERFAMILY Ran binding protein zinc finger-like 278 315 IPR036443 -
Cco11g1408 546 Pfam Probable lipid transfer 30 118 IPR016140 -
Cco11g1408 546 SUPERFAMILY Ran binding protein zinc finger-like 494 532 IPR036443 -
Cco11g1408 546 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 118 IPR036312 -
Cco11g1408 546 MobiDBLite consensus disorder prediction 525 546 - -
Cco11g1408 546 PANTHER RNA BINDING PROTEIN 380 490 IPR034870 GO:0003712(PANTHER)|GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco11g1408 546 Gene3D - 34 115 IPR036312 -
Cco11g1408 546 SMART aai_6 37 118 IPR016140 -
Cco11g1408 546 Pfam Zn-finger in Ran binding protein and others 455 485 IPR001876 -
Cco11g1408 546 Pfam Zn-finger in Ran binding protein and others 283 305 IPR001876 -
Cco11g1408 546 Pfam Zn-finger in Ran binding protein and others 500 530 IPR001876 -
Cco11g1408 546 MobiDBLite consensus disorder prediction 267 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1408 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40