Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1413 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGACTGAGAAACTTAACTGCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATTGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAATACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGATGGGGAAGCGGGTCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACGCCAAAGTGA 807 56.38 MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26888750 26891006 - CcPI632755_11g014130.1 Cco11g1413 192649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1413 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Cco11g1413 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Cco11g1413 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Cco11g1413 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cco11g1413 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1804 Cco-Chr1:30722571 Cco11g1413 Cco-Chr11:26888750 2.50E-60 dispersed
Cco03g1546 Cco-Chr3:30139622 Cco11g1413 Cco-Chr11:26888750 3.30E-87 dispersed
Cco08g1778 Cco-Chr8:28895704 Cco11g1413 Cco-Chr11:26888750 4.20E-50 dispersed
Cco10g2187 Cco-Chr10:34972337 Cco11g1413 Cco-Chr11:26888750 1.00E-30 dispersed
Cco11g1413 Cco-Chr11:26888750 Cco11g1967 Cco-Chr11:32142907 2.00E-23 dispersed
Cco11g1413 Cco-Chr11:26888750 Cco06g1814 Cco-Chr6:28499730 4.80E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1413 K08908 - csv:101214055 517.694