Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1413 | ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGACTGAGAAACTTAACTGCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATTGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAATACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGATGGGGAAGCGGGTCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACGCCAAAGTGA | 807 | 56.38 | MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK | 268 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26888750 | 26891006 | - | CcPI632755_11g014130.1 | Cco11g1413 | 192649 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1413 | 268 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 73 | 258 | - | - | |
Cco11g1413 | 268 | Pfam | Chlorophyll A-B binding protein | 72 | 238 | IPR022796 | - | |
Cco11g1413 | 268 | SUPERFAMILY | Chlorophyll a-b binding protein | 59 | 266 | - | - | |
Cco11g1413 | 268 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 12 | 263 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro) | |
Cco11g1413 | 268 | Gene3D | Chlorophyll a/b binding protein domain | 73 | 258 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1804 | Cco-Chr1:30722571 | Cco11g1413 | Cco-Chr11:26888750 | 2.50E-60 | dispersed | |
Cco03g1546 | Cco-Chr3:30139622 | Cco11g1413 | Cco-Chr11:26888750 | 3.30E-87 | dispersed | |
Cco08g1778 | Cco-Chr8:28895704 | Cco11g1413 | Cco-Chr11:26888750 | 4.20E-50 | dispersed | |
Cco10g2187 | Cco-Chr10:34972337 | Cco11g1413 | Cco-Chr11:26888750 | 1.00E-30 | dispersed | |
Cco11g1413 | Cco-Chr11:26888750 | Cco11g1967 | Cco-Chr11:32142907 | 2.00E-23 | dispersed | |
Cco11g1413 | Cco-Chr11:26888750 | Cco06g1814 | Cco-Chr6:28499730 | 4.80E-62 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1413 | K08908 | - | csv:101214055 | 517.694 |