Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1415 ATGAGAACTCGAACAGGCTTATCTTACCCTCAACTTCAACCAAACACCTTCTCTTCCGACAACCGTCATCGGAAGAGAACACATCATGCCGCTGCCGACCGCCCCTTTTGCCGGAAAAGGAACAAGCTCTCTTCCGACATCAAAACACCCATCTCCGATTTGTTCGATTCCTTGCCGGATGACCTTGTCATTTCTATTCTCTCTAATCTCAGCTCTGCCGCTTCTTCCCCCTCCGATTTCATCAATATCTTGCTAACATGCAAAAGATTGAACAGTTTAGGACTTAATCCGATGGTATTATCAAGAGCTTCTCAGAAGACTTTCGCAATTAGGGCACGAAACTGGACGGAATCCGCTCACCGGTTTCTGAAACAGTGTTCCGATGCCGGGAATGTCGAGGCCTGTTATACACTTGGCATGATTCGTTTCTACTGTTTGCAAAATCGGGGTAGCGGAGCTTCGTTGATGGCGAAGGCGGCGATTTGTTCTCACGCGCCGGCTCTTTACTCCCTCGCCGTTATTCAGTTCAACGGCAGCGGCGGATCCAAGAACGATAAGGACCTCCGCGCCGGAGTTGCGCTTTGCGCTCGTGCGGCGTTTCTCGGCCACATCGACGCCCTTAGAGAACTTGGTCATTGCCTTCAAGACGGTTACGGCGTTCGTCAGAACATAACGGAGGGTCGTCGGTTTCTTGTTCAGGCCAACGCGCGTGAACTCGCGGCCGTGCTGTCTTCGGAGGCGGCTTCTTCCGTTGTCGTATCGCGCTCGTGCCTCACGTGGAACCCTCACCCTTCTCACCACCGGCACGGTACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGTGGCTCATCCGGCGAGTCAGTTTTTGGCTGAGTGGTTCGAGGCACGTGGGGGGTCGCCTGGGCATGGTCTGAGGCTGTGTTCGCACGTGGGGTGTGGACGTCCAGAGACCAGACGGCATGAGTTTCGTCGGTGTTCCGTTTGTGGTGCCGTTAACTACTGCTCGCGTGCATGTCAGGCGCTGGATTGGAAACTCCGCCACAAGATGGATTGTGCTCCGGTGGAACGTTGGCTTGATGATAACGGTGACGGTGGGGCCGATGTGGCCGATGATATCATGGACGAAAGTTAA 1155 54.29 MRTRTGLSYPQLQPNTFSSDNRHRKRTHHAAADRPFCRKRNKLSSDIKTPISDLFDSLPDDLVISILSNLSSAASSPSDFINILLTCKRLNSLGLNPMVLSRASQKTFAIRARNWTESAHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAASSVVVSRSCLTWNPHPSHHRHGTGSGCPLLSDFGCNIPAPVAHPASQFLAEWFEARGGSPGHGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKMDCAPVERWLDDNGDGGADVADDIMDES 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26915233 26916618 + CcPI632755_11g014150.1 Cco11g1415 192651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1415 384 PANTHER MYND DOMAIN-CONTAINING 35 373 IPR044508 -
Cco11g1415 384 Gene3D Tetratricopeptide repeat domain 98 251 IPR011990 GO:0005515(InterPro)
Cco11g1415 384 FunFam Predicted protein 307 364 - -
Cco11g1415 384 SUPERFAMILY HCP-like 114 234 - -
Cco11g1415 384 SUPERFAMILY HIT/MYND zinc finger-like 313 364 - -
Cco11g1415 384 Gene3D - 308 363 - -
Cco11g1415 384 SUPERFAMILY F-box domain 52 111 IPR036047 GO:0005515(InterPro)
Cco11g1415 384 MobiDBLite consensus disorder prediction 1 18 - -
Cco11g1415 384 MobiDBLite consensus disorder prediction 1 34 - -
Cco11g1415 384 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Cco11g1415 384 Pfam MYND finger 320 359 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1415 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0374 Cco-Chr3:4073746 Cco11g1415 Cco-Chr11:26915233 1.20E-126 dispersed
Cco06g1985 Cco-Chr6:30009808 Cco11g1415 Cco-Chr11:26915233 1.80E-125 dispersed
Cco11g1415 Cco-Chr11:26915233 Cco08g1892 Cco-Chr8:29931648 9.30E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60