Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1418 ATGAAGCTCCTTATTCTGGCCACCCTCACCATCTCACTCCTCTTCCCTTTCAGCCTCCTCAATTTCCTCATCTTTTGCTCTCTCCTCATCCTCTCTCTCAACTTCTGGCTCATCCCCGGTGGATTTGCGTGGCGTAACCACCACCGCTTTTCCGTCAACCTCCCTGGCCCCTCCGGTTGGCCGCTCCTTGGCACGCTCCCCCAAATGGGGGCGCTTGCTCACCAGAATCTTGCCGCCATTGCTCACTCCTTCAAAGCCACACGCCTTATGTCCTTTAGCTTGGGTGCCACTCGAGCCATCATAAGCAGCCACCCTGACACGGCCAAGCAGATTCTCTGCGGGTCTGCTTTCTCCGACCGTCCGGTCAAGCAATCAGCTCGGCTCATGATGTTCGAGAGAGCCATTGGCTTTGCTCCAAATGGGGACTATTGGCGCAATCTTCGACGAATTGCCTCGAACCACATGTTTTCCCCACGGAGAATCTCCGACTTGGAGGGGCTCCGTAGGGAGGTGGCGGATGAAATGGTGGCAGCAGTGTCCGAAAATATGGCGGTGGATGGGGTGGTGAGGCTGAGAGAGGTGCTGCAGAAGCATTCTTTGAAGAACATAATAGAGAGTGTGTTTGGGAGTGGTTCGGAGATGGGGAGGAAGGAAGAGCTGAGTGATATGGTGAGAGAAGGATATGAATTGATAGCGATGTTCAATTGGGAAGATTATTTTCCGGTCAGCTTTTTGGATTTTGGTGGAGTGAAACGGAGGTGCAATGAATTGGCGGGCAGGGTTAATGTGGTAATTGGCCAGATTGTTGAAGAGAGAAAAAGAGAAAATAATGAGTTTAATAATGATTTTCTTACTACTTTGCTAACTTTGCCAAAGGAGGATCAGTTGAGTGATTCAGATACGGTGGCTGTTTTGTGGGAAATGATATTTCGTGGAACCGACACTATAGCAATACTTCTAGAATGGATAATGGCCAGGATGATATTACACCCAGATATCCAAGCCAAAGCTCAAAAGGAGATTGACACGTGCGTAGGGTGTAATAGGCACGTGCGTGATTCCGACATTCCGAACCTTCCTTACCTCCAGGCAATAGTTAAAGAAGTGCTTCGTCTACACCCACCAGGGCCATTACTTTCGTGGGCCCGTTTGGCAATCCACGATGTCCACGTGGACAAGATCTTAATCCCAGCTGGCACAACGGCAATGGTGAACATGTGGGCCATAGCCCACGACCCTTCCATCTGGAAAGACCCATGGACATTTAACCCGGAACGGTTCATTGGAAACGACATGTCGATTATGGGATCGGACTTGAGATTGGCGCCGTTCGGAGCTGGGCGAAGGGCGTGCCCAGGAAGGGCCTTGGGTTTAGCCACTGTGCACCTATGGCTAGCCACTTTTCTACAACGGTTCAGATGGGTTCCATGTTCTACAAAGTCAGTTAATTTATCGGAGTGTTTGAAGCTATCCCTTGAAATGAAGAAGCCTCTGAATTGTCGTGTGGTTAGTCGATGA 1518 50.13 MKLLILATLTISLLFPFSLLNFLIFCSLLILSLNFWLIPGGFAWRNHHRFSVNLPGPSGWPLLGTLPQMGALAHQNLAAIAHSFKATRLMSFSLGATRAIISSHPDTAKQILCGSAFSDRPVKQSARLMMFERAIGFAPNGDYWRNLRRIASNHMFSPRRISDLEGLRREVADEMVAAVSENMAVDGVVRLREVLQKHSLKNIIESVFGSGSEMGRKEELSDMVREGYELIAMFNWEDYFPVSFLDFGGVKRRCNELAGRVNVVIGQIVEERKRENNEFNNDFLTTLLTLPKEDQLSDSDTVAVLWEMIFRGTDTIAILLEWIMARMILHPDIQAKAQKEIDTCVGCNRHVRDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKILIPAGTTAMVNMWAIAHDPSIWKDPWTFNPERFIGNDMSIMGSDLRLAPFGAGRRACPGRALGLATVHLWLATFLQRFRWVPCSTKSVNLSECLKLSLEMKKPLNCRVVSR 505
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 26930854 26933473 - CcPI632755_11g014180.1 Cco11g1418 192654
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1418 505 FunFam Cytochrome P450 78A5 46 505 - -
Cco11g1418 505 Pfam Cytochrome P450 55 491 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 Gene3D Cytochrome P450 44 503 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PANTHER CYTOCHROME P450 78A7-RELATED 16 502 IPR051996 -
Cco11g1418 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco11g1418 505 SUPERFAMILY Cytochrome P450 55 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g1418 505 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1754 Cco-Chr1:30317539 Cco11g1418 Cco-Chr11:26930854 2.40E-150 dispersed
Cco06g0284 Cco-Chr6:3170598 Cco11g1418 Cco-Chr11:26930854 8.10E-130 dispersed
Cco11g1418 Cco-Chr11:26930854 Cco11g0030 Cco-Chr11:380718 1.80E-62 dispersed
Cco11g1418 Cco-Chr11:26930854 Cco08g1203 Cco-Chr8:23742250 3.90E-158 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1418 - - - 0.0