Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1419 ATGAGTTTAGTCAACACTCACACAAGCTCCGGCTCAATTCCTTCCCTCTCTCCTTCTTCATCCTCCATTTCCCGCTGTGCTTTCACTCACACTTCCTCCTCTGATTATGTGACGTGTGGGACACCAACTTGGATTGGGAAGGGAATCACTTGCATTTGCTTCAAGCGGAAGGGAACTTTTGAACGAATTTGTATCAACCTGACTCCTGTACAGGCAAATAGGTTAAGAAGATTACAGCACCGCATGAAGGTCTACTTTGATGGTTCAAGAATCGACCACCAGGAGGCTTTAAGAGCTCTGTGGTATGCAGCTTATCCTGGTCGAGAGCTTCAGGCGTTGGTATCAGATCAATGGAAAGAAATGGGATGGCAGGGAAGAGACCCATCAACTGATTTTAGAGGAGCTGGATTTATCTCTTTGGAGAATTTGTTGTTCTTTGCAAAGACATTCTCAACATCTTTCCAACTTCTGTTGAGAAAACAAGGAGGAAAGCCAGCTGCTTGGGAATATCCCTTTGCTGTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTTGATCTGGATGCTTCAAAACCAAGGACTTTTATCAGATCAGTTTTCCTGCAGATGTTGTCAGAGAATGAGTGGGCATTTGACTTGCTTTACTGCGTCGCCTTCGTAGTTATGGACAAACAATGGCTGGAGAGAAATGCTACCTACATGGAGTTCAATGATGTGTTGAAGTCCACCAGAGCTCAGTTGGAGAAAGAGCTTTTAATGGAGGATGTATTACGGATTGAAGATATGCCTTCTTACAACCTTCTTTTAACATTAGATTACAGGTAG 831 43.2 MSLVNTHTSSGSIPSLSPSSSSISRCAFTHTSSSDYVTCGTPTWIGKGITCICFKRKGTFERICINLTPVQANRLRRLQHRMKVYFDGSRIDHQEALRALWYAAYPGRELQALVSDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNITFMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYR 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26950446 26954899 - CcPI632755_11g014190.1 Cco11g1419 192655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1419 276 MobiDBLite consensus disorder prediction 1 21 - -
Cco11g1419 276 ProSiteProfiles ELMO domain profile. 92 253 IPR006816 -
Cco11g1419 276 PANTHER ENGULFMENT AND CELL MOTILITY 18 271 IPR050868 -
Cco11g1419 276 Pfam ELMO/CED-12 family 77 242 IPR006816 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1419 K23538 - - csv:101212364 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0247 Cco-Chr6:2654187 Cco11g1419 Cco-Chr11:26950446 6.80E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1240 . . . . . . . . Cmo04g01927 . . . . . Sed06g1749 . . Bhi07g01921 Tan04g0051 Cmetu10g1689 Lac13g0056 Hepe10g1520 . . . . . . . . . . . . . Lsi04g00678 . Chy11g01760 Cme11g02293 Blo02g00171 . . . Bpe14g00771 . . . . . . Cma04g01831 . . . . . . . . . . . . Cla11g01342 Cam11g1400 Cec11g1423 Cco11g1419 Clacu11g1557 Cmu11g1378 Cre11g1798 Lsi09g01690 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013803 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 25