Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g1420 | ATGGCGGACGATTCCCTCGAGAAGAACATCCTCCAGAGCACCGCTCTTCTCCAGTATATTCTGGAAGCCAACGCCTACCCAAGAGAGCATGAACAGTTGAAGGAACTCAGGGAATCCACCTTCGAGAAATTTGACAAGTCCATGAGTGTGATGAATGTACCGGTGGATGAAGGATTATTTCTATCAATGCTTTTGAAATTGATGAACGCAAAGAAAACGATAGAGATCGGTGTATTCACTGGCTATTCCCTCCTCACTACTGCGCTTGCATTGCCCGCCGATGGCCAGATAACAGCAATTGATGTGGATAGACAACCATTCGAATTTGGTTTGCCATTTATAAGAAAGGCGGGAGTTGATCATAAGATTAATTTTGTGGAATCCCAAGCATTGGTTGCCCTCAATGACCTCCTCAACGATGGCAAAGAAGAAGAATTTGATTTTGCATTTGTTGATGCCAAAAAATCGGAGTACATTAAATATCATGAGTTGCTTCTAAAATTGGTGAAGGTAGGTGGCATAATTGCCTATGATAACACTTTGTGGTTTGGATCAGTAGCACTAAACGATGACGATGTCCATGAAGATTTGAAGGAGAACAAAAGTCATATACAACGACTCAATGCTTTTCTAGTAAATGACATGCGGGTAGAGATAGCTCTCCTCTCTGTTGGAGACGGCGTCACTCTTTGCAGGCGTATCAAATAA | 708 | 42.51 | MADDSLEKNILQSTALLQYILEANAYPREHEQLKELRESTFEKFDKSMSVMNVPVDEGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVDRQPFEFGLPFIRKAGVDHKINFVESQALVALNDLLNDGKEEEFDFAFVDAKKSEYIKYHELLLKLVKVGGIIAYDNTLWFGSVALNDDDVHEDLKENKSHIQRLNAFLVNDMRVEIALLSVGDGVTLCRRIK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26965453 | 26968817 | - | CcPI632755_11g014200.1 | Cco11g1420 | 192656 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g1420 | 235 | PANTHER | O-METHYLTRANSFERASE-RELATED | 7 | 234 | IPR050362 | GO:0008757(PANTHER) | |
| Cco11g1420 | 235 | Pfam | O-methyltransferase | 25 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Cco11g1420 | 235 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 16 | 233 | IPR029063 | - | |
| Cco11g1420 | 235 | Gene3D | Vaccinia Virus protein VP39 | 1 | 235 | IPR029063 | - | |
| Cco11g1420 | 235 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 9 | 234 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1178 | Cco-Chr5:10930552 | Cco11g1420 | Cco-Chr11:26965453 | 2.70E-17 | dispersed | |
| Cco07g1129 | Cco-Chr7:24985467 | Cco11g1420 | Cco-Chr11:26965453 | 2.10E-36 | dispersed | |
| Cco11g1420 | Cco-Chr11:26965453 | Cco11g1422 | Cco-Chr11:26982867 | 4.30E-107 | dispersed | |
| Cco11g1420 | Cco-Chr11:26965453 | Cco11g1421 | Cco-Chr11:26973735 | 4.40E-120 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g1420 | K00588 | - | csv:101212121 | 395.586 |