Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g1421 | ATGGCCGACGATTCCCCCAAGAAGAACATCCTTCAGAGCACTGCTCTTCTCCAGTATATACTGGAAGCCAACGCCTATCCAAGAGAGCATGAACAGTTGAAGGAACTCAGGGAATCCACCTTCGAGAAATTCGACAAGTCCATGAGTTTGATGAATGTACCAGCGGATGAAGGATTGTTTCTATCAATGCTTTTGAAATTGATGAACGCAAAGAAAACGATAGAGATCGGTGTATTCACTGGCTATTCCCTCCTCACCACTGCGCTTGCACTGCCCGCCGATGGCCAGATAACCGCAATTGATGTGAATAGACAATCGTTCGAATTTGGTTTGCCATTTATCAAAAAAGCGGGAGTTGATCATAAGATCAATTTTGTGGAATCTCAGGCATTGGTTGCCTTGAATGACCTCCTCAATGATGGCAAAGAAGAAGATTTTGATTTTGCATTTGTTGATGCCAAAAAATCGGAGTATATTAAATATCATGAGTTGCTTCTAAAACTAGTGAAGGTAGGTGGAGTAATTATCTATGATAACACTCTATGGTTTGGATCAGTGGCGCTAAGCGATGACATCGTCCATGAAAAATTGAAGGAGAACAAAAGTCATATACAACAATTCAATGCTTTTCTAGTAAATGACATGCGGGTGGAGATAGCTCTCCTCACCATTGGAGATGGTGTCACTCTTTGTAGGCGTATCAAATAA | 708 | 41.53 | MADDSPKKNILQSTALLQYILEANAYPREHEQLKELRESTFEKFDKSMSLMNVPADEGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVNRQSFEFGLPFIKKAGVDHKINFVESQALVALNDLLNDGKEEDFDFAFVDAKKSEYIKYHELLLKLVKVGGVIIYDNTLWFGSVALSDDIVHEKLKENKSHIQQFNAFLVNDMRVEIALLTIGDGVTLCRRIK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26973735 | 26978497 | - | CcPI632755_11g014210.1 | Cco11g1421 | 192657 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g1421 | 235 | CDD | AdoMet_MTases | 74 | 177 | - | - | |
| Cco11g1421 | 235 | Pfam | O-methyltransferase | 25 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Cco11g1421 | 235 | Gene3D | Vaccinia Virus protein VP39 | 1 | 235 | IPR029063 | - | |
| Cco11g1421 | 235 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 16 | 233 | IPR029063 | - | |
| Cco11g1421 | 235 | PANTHER | O-METHYLTRANSFERASE-RELATED | 7 | 234 | IPR050362 | GO:0008757(PANTHER) | |
| Cco11g1421 | 235 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 9 | 234 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0648 | Cco-Chr2:6446750 | Cco11g1421 | Cco-Chr11:26973735 | 4.70E-64 | dispersed | |
| Cco11g1421 | Cco-Chr11:26973735 | Cco11g1423 | Cco-Chr11:26995225 | 4.40E-43 | dispersed | |
| Cco11g1420 | Cco-Chr11:26965453 | Cco11g1421 | Cco-Chr11:26973735 | 4.40E-120 | tandem | |
| Cco11g1421 | Cco-Chr11:26973735 | Cco11g1422 | Cco-Chr11:26982867 | 9.50E-107 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g1421 | K00588 | - | csv:101212121 | 381.333 |