Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1426 ATGGACTGGCAAGGGCAAAAGCTAGCGGAGCAGTTGATGCAGATTATGTTGGTTGCATTTGCCGTGGTGGCCTTTTTGACTGGCTATGTTATGGGATCGTTTCGGCTTATGATCTTGGTTTACGCTGGCGGTGTGTTTCTCACCACATTAATCACCGTTCCGAATTGGCCTTTCTTTAATCGTCGCCCACTCAAGTGGTTGGATCCTAGTGTGGCTGAAAAATACCCTAAGCCGCAACCGCAGGAGCCTCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAG 285 48.42 MDWQGQKLAEQLMQIMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFNRRPLKWLDPSVAEKYPKPQPQEPPVVLKKKPAKK 94
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27020816 27021100 + CcPI632755_11g014260.1 Cco11g1426 192662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1426 94 PANTHER MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT 1 90 IPR009542 GO:0005787(InterPro)|GO:0005787(PANTHER)|GO:0006465(PANTHER)|GO:0006465(InterPro)|GO:0016020(InterPro)|GO:0030176(PANTHER)|GO:0045047(PANTHER)
Cco11g1426 94 MobiDBLite consensus disorder prediction 73 94 - -
Cco11g1426 94 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 1 70 IPR009542 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1426 K12946 - - csv:101211317 147.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0647 Cco-Chr9:5760269 Cco11g1426 Cco-Chr11:27020816 7.50E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1222 . . . . . . . . . Cmo18g00694 . Cma18g00705 . Car18g00651 . Cpe09g00583 . . . . . . . . . . . . . . . . . . . Lsi04g00673 . . Cme10g00650 . . . . . . . . . . . . . Car04g01844 . . . . . . . . . . Cla11g01348 Cam11g1406 Cec11g1432 Cco11g1426 Clacu11g1563 Cmu11g1384 Cre11g1804 . . . .