Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1430 ATGAATAAAACAGGGAAGAACGGGCAGGCATCTTCAATCCTTTCATGGGCAACAAGATTACGAGTAGCCAAGGGAACCGCCAGAGGATTAGCCTATCTACACGAATGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCATCCCCACATCTCCGACTTCGGCCTCAACCGCTTGATCAGCATCACCGGCAACAACCCCTCCTCCTCAGGCGGCCTCATCGGCGGCGCCTTCTCCTACCTCAAGTCCGTCCAAACCGACCGCACCAACAACTACTGCGCCCCGGAGGCCCGAGCCCCCGGCGGCCGGCCCACCCAAAAATGGGACGTTTATTCCTTCGGCGTCATGGTCCTCGAATTACTCACCGGAAAGTCGCCGGAGCTTTCCCCGAACACGTCGACTTCTTTGGAGATTCCGGATTTGGTGAGATGGGTTAGAAAAGGGTTTGAAGAAGCAAAGCCATTGTCGGAATTGGTGGACCCTGCTCTGTTACAAGAAGTACATGCTAAGAAAGAAGTGCTGGCCGTATTCCACTTGGCGCTCGCTTGTACAGAGAGCGACCCGGAAGTTCGGCCCAGAATGAAGACGGTGTCGGAGAATTTCGAGAGGATTGGATCGTGA 651 54.38 MNKTGKNGQASSILSWATRLRVAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSELVDPALLQEVHAKKEVLAVFHLALACTESDPEVRPRMKTVSENFERIGS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27072803 27073453 - CcPI632755_11g014300.1 Cco11g1430 192666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1430 216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 41 53 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1430 216 FunFam Os07g0541700 protein 5 82 - -
Cco11g1430 216 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1430 216 SUPERFAMILY Protein kinase-like (PK-like) 13 209 IPR011009 -
Cco11g1430 216 Pfam Protein kinase domain 20 205 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1430 216 SMART serkin_6 1 214 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1430 216 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 214 IPR051564 GO:0016020(PANTHER)
Cco11g1430 216 Gene3D Transferase(Phosphotransferase) domain 1 4 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1430 Cco-Chr11:27072803 Cco04g0803 Cco-Chr4:23360717 6.60E-30 dispersed
Cco11g1430 Cco-Chr11:27072803 Cco05g2510 Cco-Chr5:33458521 9.50E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87250 PF00069 Pkinase 2.00E-21 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1430 - - - 0.0