Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1437 ATGTCGTTCCTAACGAACATGCCATCGACAACCTCTGTTTTCTCAGCCTACACTTCCTTCGCCGCTTCATCAATGGTGGCTCGAACAATGATATCCGAAACCCACTCAATCATCTCCCAAATCATTCCCCAAACACTCCGCGATCAAATCTCCTCCAAATTCAACGCCATTTTCGGTTCAATCTCCTCTCAAATGCTTCTCATTATCGAAGAAAACAACGGAATCGCCATTAATGAGCTTTACAGAGCATCCGAAACTTACCTCTCTACAAAAATCTCTCCATCGCTGAACCATCTCAAGGCTTCCAAGGCTCCAGGAGAAACCAATGTAACCTTCAAAATCAACAAAGGCGATGTACTAATCGACGTATTCGAAGGAATCCAAATCGCCTGGGAATTGATTTCCACAGAAAAACAGAGCACTTATTTCGATTTCGAAATCTCTACTCAAACATCCGAAACAATTGAAAAACGACATTACCAAATCAGCTTCAACAAGAAACACACAGATTTGGTAATGAAGATTTACCTTCCGTTTATTCTGAACAGAGCAAAAGTCATAGAGGAAGAAAACAGAGTGGTGAAGCTTTATGCGTTAATGGGGGGATATGGGAATGGGGATTCAATTGTTTTGCAGAACAGTTGTAGTTTTGGGAATTTGGCTATGGATGAGAAGAAGAAGAGGGAATTGATGGAGGATTTGGATAGATTTGTGAGGAGAAGGGAATTTTATAGGAGGATTGGGAAGGCTTGGAAAAGAGGGTATCTTCTTTATGGGCCGCCGGGAACAGGGAAATCGAGCTTGGTGGCGGCCATGGCGGATTATTTGAAGTTTAATATTTATGATTTGGAGCTTAGCAGTGTTCACTCAAACTCGGCGCTTAGAACGATGCTGTTGTCCACTGCTGATAGGTCCATTATTGTGATTGAGGATATTGACTGCAGCGCTGAGCTGAAGGACCGTACAAATGGCGGACGTGACGGCGGTGACAGCCAGTTGACTTTGTCTGGAGTGTTGAACGTCATAGATGGCCTATGGTCAAGTTGTGGAGATGCAAGAATAATAGTTTTCACAACAAACCATAAGGAAAGATTGGACCCCGCATTGTTAAGACCCGGGCGCATGGATATGCACGTCCACATGACTTATTTGACTCCTTATGGATTTGAAATTCTAGCCTCTAACTATTTGCAAATCAATCACCATCAACGTTTCAAAGAAATTCAAGACCTTATAATGGAGGTGGATGTCACACCTGCAGAAATTGCAGGGGAGCTCATGAAAAGTGACGATGCTGACATGGCACTTGAATCCGTCGTTGAATTCGTCAACGGAAAGAAGAGGAAGAAGATGGAGAAAGAGTGTAATTCTGACGTGATCGAAAATGTTGGTTGTCATAACCCCCAAGACAATGAGGATCAAGAAGATCTAAAGGAGAGAGAAATATAA 1449 42.79 MSFLTNMPSTTSVFSAYTSFAASSMVARTMISETHSIISQIIPQTLRDQISSKFNAIFGSISSQMLLIIEENNGIAINELYRASETYLSTKISPSLNHLKASKAPGETNVTFKINKGDVLIDVFEGIQIAWELISTEKQSTYFDFEISTQTSETIEKRHYQISFNKKHTDLVMKIYLPFILNRAKVIEEENRVVKLYALMGGYGNGDSIVLQNSCSFGNLAMDEKKKRELMEDLDRFVRRREFYRRIGKAWKRGYLLYGPPGTGKSSLVAAMADYLKFNIYDLELSSVHSNSALRTMLLSTADRSIIVIEDIDCSAELKDRTNGGRDGGDSQLTLSGVLNVIDGLWSSCGDARIIVFTTNHKERLDPALLRPGRMDMHVHMTYLTPYGFEILASNYLQINHHQRFKEIQDLIMEVDVTPAEIAGELMKSDDADMALESVVEFVNGKKRKKMEKECNSDVIENVGCHNPQDNEDQEDLKEREI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27129170 27132122 - CcPI632755_11g014370.1 Cco11g1437 192673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1437 482 Gene3D - 380 450 - -
Cco11g1437 482 MobiDBLite consensus disorder prediction 461 482 - -
Cco11g1437 482 Gene3D - 208 379 IPR027417 -
Cco11g1437 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 429 IPR027417 -
Cco11g1437 482 PANTHER BCS1 AAA-TYPE ATPASE 25 449 IPR050747 -
Cco11g1437 482 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Cco11g1437 482 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco11g1437 482 Pfam ATPase family associated with various cellular activities (AAA) 255 382 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco11g1437 482 SMART AAA_5 251 385 IPR003593 GO:0016887(InterPro)
Cco11g1437 482 MobiDBLite consensus disorder prediction 468 482 - -
Cco11g1437 482 CDD RecA-like_BCS1 230 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1437 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2118 Cco-Chr5:30149857 Cco11g1437 Cco-Chr11:27129170 2.20E-115 dispersed
Cco10g1461 Cco-Chr10:27727744 Cco11g1437 Cco-Chr11:27129170 2.90E-74 dispersed
Cco10g1462 Cco-Chr10:27739192 Cco11g1437 Cco-Chr11:27129170 1.10E-75 dispersed
Cco11g1298 Cco-Chr11:25555816 Cco11g1437 Cco-Chr11:27129170 2.40E-13 dispersed
Cco11g1437 Cco-Chr11:27129170 Cco02g2030 Cco-Chr2:33261414 6.30E-12 dispersed
Cco11g1437 Cco-Chr11:27129170 Cco07g0933 Cco-Chr7:21433017 5.50E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01355 Cam11g1413 Cec11g1439 Cco11g1437 Clacu11g1570 Cmu11g1390 Cre11g1811 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111