Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1438 ATGCGAACGCCGGAAAATTCGAATGGTCAATATCAAGTAATCCGAATTGCTGGTGATGGAAGATGTTTGTTTCGATCAGTGGTTCATGGTGCTTGTCTCAGATCGGGGAAGCCGGCTCCAAGCGAAGTTCTTCAAAAAGAGCTTGCAGACGAGCTCAGAGAAAACGTTGCGGATGAGCTGATGAAGAGGCGTTTGGACACTGAACGGTTTATTGAAGGTGACTTCGGTCAGTATGTTAGACGCATGCGCCAACCACATGTTTGGGGAGGAGAACCTGAGTTACTTATGTGTTCACACGTCCTACAGATACCAATCTCAGTCCACATGAGGGACAAGAACTCGGGAAATCTTAAGCTCATAGCTGAGTATGGGCAGGATAAAAAATTAATTGTTAAGACTCAAGTATTAGCCATCCTCAACATCAACGTCTTCCTTCTTGCTCAAACTGTCTCACATCAGCACCTTCTTGCTTGGATGAGCTCTCCCACTCCTTCTCCCCCTACTCTCTCTTCAGTCCCCTACTCCACCGGCGACGGTCACCTCTATCGGCCATTACCGCCGCTACTAGTTCATTTCATATTTCTGCTTCGTCCAATTCGTAATGTAAGAGTGCGCCATCTCGGAGCTTTTCTTCTGATTCTGAAGGACGACAGAGACTCCGATCCAGACGATATTCTTCCTAATCTCATCCTGACTCCAAGGGAAGTGGAAAAACTAGGTCTGCATAATGCGGGATATTTAGCACAGAAGCGTCTTGCTCGTGGCTTGAGGCTGAATTACGCTGAAGCTGTAGCACTTATTGCCTCACAGATTTTGGAGTTCGTTCGCGATGGCAATTGCAGCGTGGCAGAATTGATGGAATTAGGGCGAGAACTCTTAGGGAGGAGACAAGTTCTTCCAAGTGTTCCACATCTTTTGAATTATATTCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAATAACTGTTCATAAGCCCATTGAGTCAGAGGTTGGGAATCTTGAGCGAGCTTTGCAGGGTTCTTTTCTTCCAGTTCCTTCGCTAGACAAGTTCCCTTTGATGGAAGATAGTAAAGTGCCTGGTGAGATTATCTGTGATGATAAAAAGATTGCAATTAATGTTGGACGGAAAGCTGTAATACTCAGTGTAAAAAATATGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGACAAATCCTTCTTTAGTTTTTGATCGATCAAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCCACACGATTTGAGCCAGGGTGTCCAAAAGATGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAACTGCATCGCCGATGGTCCAGTTGATAAATCCAAATTGAAAGAAGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATTTGGAAGAAAAAGATACTAGAGAAGGTGTTACTGGAGGGGAGGATGAGATATTCACCACCAGAGTTCTTCGTGAGGAGTATGCCAACCACTATGGTCCCACAACTGGCGACAAAGTTCGTCTTGGTGATACAGATTTATATGCTGAAATCGAACATGATTTCTGTGTTTATGGGGATGAATGTATGTTTGGAGGTGGAAAGGTTATCAGAGATGGAATGGGCCAGGCGTGTGGGCATCCACCGGCTTCATCTCTTGATACCGTAATAACCAATGCAGTGATCATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCACTTGGAAAAGCCGGCAATCCTGATGTCATGGACAGAGTTTGTCCTAATCTGATTATTGGGACTAATACTGAGGTTATTTCTGGAGAAGGATTGCTTGTTACTTCAGGGGCTATAGATTGCCATGTCCACTACATATGCCCTCAAATGGTACATGAAGCAATATCGAGTGGCATCACAACGCTGGTGGGAGGTGGAACTGGGCCAGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGCGCTGATGAAGATGATCCTCCAATCAACTGATAACCTCCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGATGAGATACATGAAATTATAAGGGCCGGAGCTATGGGACTGAAGCTACATGAAGACTGGGGATGCACTCCTGCTGCAATTGACAGTTGTTTAGCTGTGGCTGAAAAATATGACATTCAGGTTAATATTCACACTGACACCTTGAATGAATCTGGATTTGTTGAAGATACGATTGCAGCTTTTAAAGGAAGAACTATACACACATACCACACTGAAGGAGCTGGAGGCGGTCATGCACCGGATATCATCAAAGTGTGCAGTGTGAAAAATGTGCTTCCTTCATCAACTAATCCAACACGACCATTCACAACAAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGATCCCAATATTGAAGAAGATGTAGCTTTTGCTGAATCAAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATATGGGAGCAATTAGTATGATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGATTAGCAGAACATGGCAAACTGCCCACAAGATGAAGTTGCAAAGGGAACCGCTTGATTCCACAAAGCCAGACGACGACAACCTTCGGATCAAGCGATATGTCTCCAAATATACCATCAATCCAGCCATAGCAAATGGGATTTCTGAATATGTTGGTTCAGTAGAGGTAGGGAAATGGGCTGATCTTGTTCTATGGAAACCCTCCTTTTTTGGGACAAAACCAGAGAAGGTGTTGAAAGGTGGTATAATTGCATGGGCGAACATGGGTGATCCAAATGCAAGCATTCCTACACCTGAACCGGTACTGATGAGGCCAATGTACGGATCCATGGGAAAGGCAGCAAGTGGCAGCTCAATTGCCTTTGTGAGTAAGGCAGCATTTAACGCGGGAGTTAAGGACATGTATGGACTAAACAAGAGAGTTGTAGCAGTGAGCAACGCTAGGAAACTTACGAAACTAGACATGAAATGGAATGATGCCCTTCCAAACATCCAAGTGGATCCTGATCACTATGACGTGAAAGTAGATGGCGATGTTCTTACTTGTCTCCCCGCCACTACTCTCCCACTTTCAAGGGATTACTTTCTTTTCTAG 3201 44.39 MRTPENSNGQYQVIRIAGDGRCLFRSVVHGACLRSGKPAPSEVLQKELADELRENVADELMKRRLDTERFIEGDFGQYVRRMRQPHVWGGEPELLMCSHVLQIPISVHMRDKNSGNLKLIAEYGQDKKLIVKTQVLAILNINVFLLAQTVSHQHLLAWMSSPTPSPPTLSSVPYSTGDGHLYRPLPPLLVHFIFLLRPIRNVRVRHLGAFLLILKDDRDSDPDDILPNLILTPREVEKLGLHNAGYLAQKRLARGLRLNYAEAVALIASQILEFVRDGNCSVAELMELGRELLGRRQVLPSVPHLLNYIQVEGTFPDGTKLITVHKPIESEVGNLERALQGSFLPVPSLDKFPLMEDSKVPGEIICDDKKIAINVGRKAVILSVKNMGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGCPKDVTLVAIGGNQVIRGGNCIADGPVDKSKLKEVMEAVHARGFGHLEEKDTREGVTGGEDEIFTTRVLREEYANHYGPTTGDKVRLGDTDLYAEIEHDFCVYGDECMFGGGKVIRDGMGQACGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISLGKAGNPDVMDRVCPNLIIGTNTEVISGEGLLVTSGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPALMKMILQSTDNLPLNFGFTGKGNSSKPDEIHEIIRAGAMGLKLHEDWGCTPAAIDSCLAVAEKYDIQVNIHTDTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIKVCSVKNVLPSSTNPTRPFTTNTIDEHLDMLMVCHHLDPNIEEDVAFAESRIRKETIAAEDILHDMGAISMISSDSQAMGRIGEVISRTWQTAHKMKLQREPLDSTKPDDDNLRIKRYVSKYTINPAIANGISEYVGSVEVGKWADLVLWKPSFFGTKPEKVLKGGIIAWANMGDPNASIPTPEPVLMRPMYGSMGKAASGSSIAFVSKAAFNAGVKDMYGLNKRVVAVSNARKLTKLDMKWNDALPNIQVDPDHYDVKVDGDVLTCLPATTLPLSRDYFLF 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27134531 27154658 + CcPI632755_11g014380.1 Cco11g1438 192674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1438 1066 NCBIfam urease subunit alpha 501 1066 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 SUPERFAMILY Urease, beta-subunit 360 488 IPR036461 -
Cco11g1438 1066 ProSiteProfiles OTU domain profile. 11 161 IPR003323 -
Cco11g1438 1066 Pfam Amidohydrolase family 625 952 IPR006680 GO:0016787(InterPro)
Cco11g1438 1066 CDD Urease_beta 359 459 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 NCBIfam urease subunit beta 360 460 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 Pfam Urease alpha-subunit, N-terminal domain 500 618 IPR011612 -
Cco11g1438 1066 NCBIfam urease subunit gamma 231 330 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 ProSiteProfiles Urease domain profile. 628 1066 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 SUPERFAMILY Metallo-dependent hydrolases 628 1066 IPR032466 -
Cco11g1438 1066 PRINTS Urea amidohydrolase (urease) protein signature 926 939 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 PRINTS Urea amidohydrolase (urease) protein signature 900 915 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 PRINTS Urea amidohydrolase (urease) protein signature 794 811 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 PRINTS Urea amidohydrolase (urease) protein signature 833 849 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 PANTHER UREASE 231 1066 IPR050069 -
Cco11g1438 1066 Pfam OTU-like cysteine protease 18 131 IPR003323 -
Cco11g1438 1066 ProSiteProfiles Rhodanese domain profile. 945 963 IPR001763 -
Cco11g1438 1066 SUPERFAMILY Composite domain of metallo-dependent hydrolases 908 978 IPR011059 GO:0016810(InterPro)
Cco11g1438 1066 Gene3D - 628 1066 - -
Cco11g1438 1066 Gene3D - 3 137 - -
Cco11g1438 1066 CDD Urease_alpha 499 1065 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cco11g1438 1066 ProSitePatterns Urease active site. 816 832 IPR017950 GO:0009039(InterPro)
Cco11g1438 1066 SUPERFAMILY Urease, gamma-subunit 230 331 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 Pfam Urease beta subunit 361 457 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 Gene3D Urease, beta subunit 359 489 IPR036461 -
Cco11g1438 1066 SUPERFAMILY Composite domain of metallo-dependent hydrolases 499 676 IPR011059 GO:0016810(InterPro)
Cco11g1438 1066 Gene3D - 232 352 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 Pfam Urease, gamma subunit 231 328 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 FunFam Urease subunit alpha 232 352 - -
Cco11g1438 1066 SUPERFAMILY Cysteine proteinases 11 116 IPR038765 -
Cco11g1438 1066 Pfam Urease subunit beta-alpha linker domain 459 490 IPR040881 -
Cco11g1438 1066 Gene3D Urease, subunit C, domain 1 502 979 IPR011059 GO:0016810(InterPro)
Cco11g1438 1066 CDD Urease_gamma 232 328 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cco11g1438 1066 CDD OTU_plant_OTU4-like 11 126 IPR047947 -
Cco11g1438 1066 Hamap Urease subunit alpha [ureC]. 498 1066 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1438 K01427 - - csv:101209590 1386.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1710 Cco-Chr10:30649853 Cco11g1438 Cco-Chr11:27134531 3.60E-42 dispersed
Cco11g1438 Cco-Chr11:27134531 Cco11g1439 Cco-Chr11:27158920 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49