Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1440 ATGGATCTAAGGACTGTTTTGGACTCCGCTCGCTTGCGCGACTTCTCTTCGATTCATACCGCTCTTTATCCAATCCTACTTTACAGATTACAGGTCGAGGCTCGGATTCAATTTTTTGAATCTCCCCTAGCGGGGAGAATGGGGGGTTATCGCGACTATGATATGAAGGACCGGGATTCCAGTTTTGATGTTTCGGGAGTAATTGCGAAAGAAGGATATGAACGGGGGCGGAGCGGTAACCGTGAAAGCAATAAGAGTCGAGGTCGGGATGTTAGAGACAGAATTAGGGTCCGGCAAAAGGATATCAAGGAGAGGGAAGCGGGTAATGGTAGTCTACGATCTTCGAGTAGAAGTGATTCTGGAAGCAGTGGTGGTATTGCTTCTCACGGGTTGAAGCAAAAGGTTTCGCTTGTCAGGACAATGGATAGGGAGCCGGGCGAGCTATCCAGTGAAAGTGGATCTGATGATGCCACTGAGTCCGGATTACGATTTAAAAATAGTGAGTCGGCAAAGGTGGTGGAGAATGGTATTCATTCTCCACTAGAGAAGAAGAGGAAGTTCTCACCAATAGTTTGGGACAGAGACGATAAGGAAGATGCCATTTCCACAAGAAATAAGGTTGCCAAGGCTGCGACTGCTTCATCTGTGCCGTCACCAAAGGAGCAGAAGGAGTCTCCTAATGCAACGTCGGACACTCTTGATGCTATGCCAACGGCAGGTGGTAGAAGTAAGGATCTGGAGTACTTGCAACCTTCCTCTCTTGTTGAACCTTTTGCTGGGGGCCTTGGATCAGATGAATTCTCCGCAAGTGGTTCACCAATGATGCCATCTTCTGCTTTGCTTAGGAAACCATGGCAGAATAATCTTGAAGCAGAAAATTTTGGGGACGATGATTATGCTCCCACAAGGAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACACTCCTGGTGATGAAGGTGAAATTTTAGACGAGGAAATGCCTAAAAGACGAAAGACAACACCAATTTCTGAGTCCTTGGAGGGCATCAAAGTACAAAGAAAATCATTAACTCCAGAGATTGGGGAGATAATGAGACAAGGCTCTGAAGCAGGGACAAGGTCATCTGAATCGATGGAACGTGGTGATCGGTCTCGATCATCTAGTGCAAATCATTACCTTGGTAATGATTTTGAGAAGGACGAAGGCATGGATCTTGGTGATGATATTCGTAGAATGGATACTAGCAGTAGCAGGTTGGATACTGATTCTGAGGATGAGACAGAATCTCCCGAGGAAGCAGAGCCTAGTGGCCCTCCTCCCCAACGAAGTGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAGAGGTTGAATAAGATCGATGAAGGAACTTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGTCAGGGGAAATTGTTGCGTTGAAGAAGGTAAAAATGGAAAAGGAACGAGAAGGTTTTCCCATGACTTCTTTGAGAGAAATAAACATTCTTCTATCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGTCTCGATAGCATTTTTATGGTAATGGAGTACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTTCAGTTACTGGAGGGTGTTAAATACCTTCACGATAATTGGGTGCTCCATAGGGATTTAAAAACATCAAATTTACTTATGAATAACCAGGGAGAGTTGAAGATCTGTGATTTTGGACTAGCTCGGCAATATGGGAGCCCCTTGAAAACGTATACACATATGGTTGTTACTCTTTGGTACAGGGCACCTGAACTTTTATTGGGAACAAGACAGTATTCTACAGCAATTGACATGTGGTCCTTGGGTTGTATTATGGCGGAATTATTGTCAAAGCAACCACTGTTTAATGGAAAAACTGAAGTTGATCAACTTGACAAGATATTCCGAACTCTAGGGACACCCAATGAAACAATCTGGCCTGGGTTTTCCAAGCTTCCAGGAGTAAGGGTGAACTTTGTTAAGCACCAGTACAACTTATTGCGTAAGAAATTCCCAGCGACATCATTTACCGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCATGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGAATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTACGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAACGCAGAAAGGAGTTGCAGCAAGGGGAATTGGGAACATCTGGCTTAAAATGCTTCACTGACACGGCTTGCATGGCAAGAGATGGTTGGTGGGAAGGGGAGGGCGATCTTTGCTTCTCGTTGGCGAAGAATTTGACAGTTACGTTAGTTTTTCAAAGTATCAAAGCTAGCAGCTTGGCGGAGATCGAGCGCTGTTTGGTCTTGATCTTGGTGAATAATCCGTAG 2562 44.38 MDLRTVLDSARLRDFSSIHTALYPILLYRLQVEARIQFFESPLAGRMGGYRDYDMKDRDSSFDVSGVIAKEGYERGRSGNRESNKSRGRDVRDRIRVRQKDIKEREAGNGSLRSSSRSDSGSSGGIASHGLKQKVSLVRTMDREPGELSSESGSDDATESGLRFKNSESAKVVENGIHSPLEKKRKFSPIVWDRDDKEDAISTRNKVAKAATASSVPSPKEQKESPNATSDTLDAMPTAGGRSKDLEYLQPSSLVEPFAGGLGSDEFSASGSPMMPSSALLRKPWQNNLEAENFGDDDYAPTRNISSSRWAAGNNTPGDEGEILDEEMPKRRKTTPISESLEGIKVQRKSLTPEIGEIMRQGSEAGTRSSESMERGDRSRSSSANHYLGNDFEKDEGMDLGDDIRRMDTSSSRLDTDSEDETESPEEAEPSGPPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLMNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKEFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELQQGELGTSGLKCFTDTACMARDGWWEGEGDLCFSLAKNLTVTLVFQSIKASSLAEIERCLVLILVNNP 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27176003 27182869 - CcPI632755_11g014400.1 Cco11g1440 192676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1440 853 SUPERFAMILY Protein kinase-like (PK-like) 443 748 IPR011009 -
Cco11g1440 853 Gene3D Phosphorylase Kinase; domain 1 436 533 - -
Cco11g1440 853 CDD STKc_CDC2L1 445 742 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1440 853 MobiDBLite consensus disorder prediction 74 110 - -
Cco11g1440 853 FunFam cyclin-dependent kinase G-2 isoform X1 436 533 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 151 165 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 323 338 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 111 129 - -
Cco11g1440 853 Pfam Protein kinase domain 451 742 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1440 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1440 853 MobiDBLite consensus disorder prediction 136 150 - -
Cco11g1440 853 FunFam Cyclin-dependent kinase G-2 534 773 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 177 204 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 73 440 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 389 418 - -
Cco11g1440 853 MobiDBLite consensus disorder prediction 207 236 - -
Cco11g1440 853 ProSiteProfiles Protein kinase domain profile. 451 742 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1440 853 Gene3D Transferase(Phosphotransferase) domain 1 534 773 - -
Cco11g1440 853 PANTHER CELL DIVISION PROTEIN KINASE 450 742 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Cco11g1440 853 SMART serkin_6 451 742 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1440 853 MobiDBLite consensus disorder prediction 300 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1440 K08818 - - csv:101209096 1319.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1903 Cco-Chr8:30030380 Cco11g1440 Cco-Chr11:27176003 3.20E-243 dispersed
Cco11g0469 Cco-Chr11:4996384 Cco11g1440 Cco-Chr11:27176003 1.40E-61 dispersed
Cco11g1440 Cco-Chr11:27176003 Cco03g1703 Cco-Chr3:31767472 1.50E-56 dispersed
Cco05g2431 Cco-Chr5:32817538 Cco11g1440 Cco-Chr11:27176003 6.80E-78 transposed
Cco06g1643 Cco-Chr6:27032917 Cco11g1440 Cco-Chr11:27176003 2.80E-69 transposed
Cco11g0257 Cco-Chr11:2512120 Cco11g1440 Cco-Chr11:27176003 6.90E-35 transposed
Cco11g1957 Cco-Chr11:32088666 Cco11g1440 Cco-Chr11:27176003 1.80E-73 transposed
Cco11g1440 Cco-Chr11:27176003 Cco05g1768 Cco-Chr5:26133950 1.90E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87251 PF00069 Pkinase 1.60E-75 CL0016 Cco PK