Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1461 | ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGCATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCTAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGACGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTCGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTTTGTGTGCTATCGCATCTCTGGTTTCCCCTACTTGGATCTCATCTACTTTGGGGACTCGATCACGACCCAGCCAGAGTGGTCTGACTCATTCCAAAGCCGAGTTTATCATGCGTGTAATGGCTGCCAACTCAGTGAGGAAGCTAAGCCTCATTGGATTGAGCTATGGTGGGTTTGTTGGATATTGCTTGGCGGCGAGATATCGCGAGGTGGTGGAGAGGGTGGTGATATGTAGTGCAGACTTGGAGGAGGCAGCCAAGATCTTGGTGCCGCAAGATCTTAAGAAATTGAAAGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTAGCATTGCTGCCCTCTTGTTTACTGGCTGATTTCATTCAAGCTATGTGCAGTGAATATGTAGAAGAAAGGATAGAGTTAATCAAAGCTATTTCAAAAGACAGGAAACTATCAGACATCCCCAAGATCCATCAGCCAACTTTGATAATTTGGGAGAAGGTGACAAGGCATTTTGGGGAAAGCGCTCAACTGGTAGTAATCAAGAACGCAGGGCATGCTTGTGATTTGGAAAAGCCCAAGGAGTACTATCATCACTTGAAGTCCTTCCTCGGCATCCAGCGGCGAAATCACAAATGA | 1452 | 45.52 | MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVLCAIASLVSPTWISSTLGTRSRPSQSGLTHSKAEFIMRVMAANSVRKLSLIGLSYGGFVGYCLAARYREVVERVVICSADLEEAAKILVPQDLKKLKELVKFALFRPPPLALLPSCLLADFIQAMCSEYVEERIELIKAISKDRKLSDIPKIHQPTLIIWEKVTRHFGESAQLVVIKNAGHACDLEKPKEYYHHLKSFLGIQRRNHK | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27421448 | 27429850 | + | CcPI632755_11g014610.1 | Cco11g1461 | 192697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1461 | 483 | Gene3D | alpha/beta hydrolase | 292 | 475 | IPR029058 | - | |
Cco11g1461 | 483 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 278 | IPR001932 | - | |
Cco11g1461 | 483 | Pfam | Protein phosphatase 2C | 40 | 271 | IPR001932 | - | |
Cco11g1461 | 483 | PANTHER | PROTEIN PHOSPHATASE | 30 | 276 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cco11g1461 | 483 | Pfam | alpha/beta hydrolase fold | 307 | 370 | IPR000073 | - | |
Cco11g1461 | 483 | SMART | PP2C_SIG_2 | 42 | 278 | IPR001932 | - | |
Cco11g1461 | 483 | FunFam | Probable protein phosphatase 2C 39 | 21 | 279 | - | - | |
Cco11g1461 | 483 | SUPERFAMILY | alpha/beta-Hydrolases | 308 | 475 | IPR029058 | - | |
Cco11g1461 | 483 | SUPERFAMILY | PP2C-like | 25 | 277 | IPR036457 | - | |
Cco11g1461 | 483 | CDD | PP2Cc | 30 | 278 | IPR001932 | - | |
Cco11g1461 | 483 | SMART | PP2C_4 | 23 | 276 | IPR001932 | - | |
Cco11g1461 | 483 | Gene3D | - | 26 | 281 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0249 | Cco-Chr7:2544210 | Cco11g1461 | Cco-Chr11:27421448 | 1.60E-87 | dispersed | |
Cco11g0828 | Cco-Chr11:9919661 | Cco11g1461 | Cco-Chr11:27421448 | 1.20E-29 | dispersed | |
Cco11g1461 | Cco-Chr11:27421448 | Cco11g1844 | Cco-Chr11:31126697 | 2.90E-86 | dispersed | |
Cco05g1832 | Cco-Chr5:27225870 | Cco11g1461 | Cco-Chr11:27421448 | 1.30E-52 | transposed | |
Cco06g1648 | Cco-Chr6:27079369 | Cco11g1461 | Cco-Chr11:27421448 | 5.20E-24 | transposed | |
Cco09g0468 | Cco-Chr9:4113846 | Cco11g1461 | Cco-Chr11:27421448 | 4.80E-34 | transposed | |
Cco10g0895 | Cco-Chr10:18857304 | Cco11g1461 | Cco-Chr11:27421448 | 6.90E-120 | transposed | |
Cco11g1938 | Cco-Chr11:32012260 | Cco11g1461 | Cco-Chr11:27421448 | 3.30E-32 | transposed | |
Cco11g1461 | Cco-Chr11:27421448 | Cco04g1631 | Cco-Chr4:31618290 | 1.10E-35 | wgd | |
Cco11g1461 | Cco-Chr11:27421448 | Cco08g1262 | Cco-Chr8:24431492 | 1.90E-48 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1461 | K17506 | - | csv:101213414 | 546.969 |