Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1461 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGCATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCTAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGACGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTCGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTTTGTGTGCTATCGCATCTCTGGTTTCCCCTACTTGGATCTCATCTACTTTGGGGACTCGATCACGACCCAGCCAGAGTGGTCTGACTCATTCCAAAGCCGAGTTTATCATGCGTGTAATGGCTGCCAACTCAGTGAGGAAGCTAAGCCTCATTGGATTGAGCTATGGTGGGTTTGTTGGATATTGCTTGGCGGCGAGATATCGCGAGGTGGTGGAGAGGGTGGTGATATGTAGTGCAGACTTGGAGGAGGCAGCCAAGATCTTGGTGCCGCAAGATCTTAAGAAATTGAAAGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTAGCATTGCTGCCCTCTTGTTTACTGGCTGATTTCATTCAAGCTATGTGCAGTGAATATGTAGAAGAAAGGATAGAGTTAATCAAAGCTATTTCAAAAGACAGGAAACTATCAGACATCCCCAAGATCCATCAGCCAACTTTGATAATTTGGGAGAAGGTGACAAGGCATTTTGGGGAAAGCGCTCAACTGGTAGTAATCAAGAACGCAGGGCATGCTTGTGATTTGGAAAAGCCCAAGGAGTACTATCATCACTTGAAGTCCTTCCTCGGCATCCAGCGGCGAAATCACAAATGA 1452 45.52 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVLCAIASLVSPTWISSTLGTRSRPSQSGLTHSKAEFIMRVMAANSVRKLSLIGLSYGGFVGYCLAARYREVVERVVICSADLEEAAKILVPQDLKKLKELVKFALFRPPPLALLPSCLLADFIQAMCSEYVEERIELIKAISKDRKLSDIPKIHQPTLIIWEKVTRHFGESAQLVVIKNAGHACDLEKPKEYYHHLKSFLGIQRRNHK 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27421448 27429850 + CcPI632755_11g014610.1 Cco11g1461 192697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1461 483 Gene3D alpha/beta hydrolase 292 475 IPR029058 -
Cco11g1461 483 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cco11g1461 483 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cco11g1461 483 PANTHER PROTEIN PHOSPHATASE 30 276 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco11g1461 483 Pfam alpha/beta hydrolase fold 307 370 IPR000073 -
Cco11g1461 483 SMART PP2C_SIG_2 42 278 IPR001932 -
Cco11g1461 483 FunFam Probable protein phosphatase 2C 39 21 279 - -
Cco11g1461 483 SUPERFAMILY alpha/beta-Hydrolases 308 475 IPR029058 -
Cco11g1461 483 SUPERFAMILY PP2C-like 25 277 IPR036457 -
Cco11g1461 483 CDD PP2Cc 30 278 IPR001932 -
Cco11g1461 483 SMART PP2C_4 23 276 IPR001932 -
Cco11g1461 483 Gene3D - 26 281 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0249 Cco-Chr7:2544210 Cco11g1461 Cco-Chr11:27421448 1.60E-87 dispersed
Cco11g0828 Cco-Chr11:9919661 Cco11g1461 Cco-Chr11:27421448 1.20E-29 dispersed
Cco11g1461 Cco-Chr11:27421448 Cco11g1844 Cco-Chr11:31126697 2.90E-86 dispersed
Cco05g1832 Cco-Chr5:27225870 Cco11g1461 Cco-Chr11:27421448 1.30E-52 transposed
Cco06g1648 Cco-Chr6:27079369 Cco11g1461 Cco-Chr11:27421448 5.20E-24 transposed
Cco09g0468 Cco-Chr9:4113846 Cco11g1461 Cco-Chr11:27421448 4.80E-34 transposed
Cco10g0895 Cco-Chr10:18857304 Cco11g1461 Cco-Chr11:27421448 6.90E-120 transposed
Cco11g1938 Cco-Chr11:32012260 Cco11g1461 Cco-Chr11:27421448 3.30E-32 transposed
Cco11g1461 Cco-Chr11:27421448 Cco04g1631 Cco-Chr4:31618290 1.10E-35 wgd
Cco11g1461 Cco-Chr11:27421448 Cco08g1262 Cco-Chr8:24431492 1.90E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1461 K17506 - csv:101213414 546.969