Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1462 ATGTTGACTGTTTGTCTCCGCAGTGGAGCCCAGCCCAAGCCTGAGTACAAGCCAAGTACAAACCACCAGGGTGCAAATTCGAAGCCAAGATTTCAGTTTCGGTTGGAGAAGCTTCAGAAAGAGAGGAAAAAAGCGATGGCGAAAGAGAGAGAACTACTCGTTTACTCAGCTAGATTGGCAGAGCAAGCTGAGAGATACGAAGAGATGGTTGAGAAAATGGAGAAAGTTGCAAAGTTAAACGTGGAATTGACTGTGGAAGAGAGAAATCTGCTATCTGTTGGTTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTATCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGGTTACAGGCATCGGGTTGAAAATGAGCTCTCTAAAATATGCAGTGACATATTGTCGATCATTGACCAGCATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGACTATTGTCGGTATTTGGCTGAGTTTAAATCTGGTGACGAGCGTAAACAAGTTGCAGATCAATCATTAAAGTCTTATGAGGCTGCATCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCGCTGAACTTCTCTGTTTTCTACTATGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCCAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAGTGAAGAATCCTACAAGGACAGTACCCTTATTATGCAACTCCTTAGGGACAACCTGACTCTGTGGACTTCTGATCTTCCAGACGAAGGTGGAGAGCAGTCCAATGCTGATGAACTTTAG 885 43.28 MLTVCLRSGAQPKPEYKPSTNHQGANSKPRFQFRLEKLQKERKKAMAKERELLVYSARLAEQAERYEEMVEKMEKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIGYRHRVENELSKICSDILSIIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVADQSLKSYEAASAIANSDLSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSNADEL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27431338 27435484 - CcPI632755_11g014620.1 Cco11g1462 192698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1462 294 ProSitePatterns 14-3-3 proteins signature 1. 88 98 IPR023409 -
Cco11g1462 294 Coils Coil 56 79 - -
Cco11g1462 294 Coils Coil 238 258 - -
Cco11g1462 294 ProSitePatterns 14-3-3 proteins signature 2. 260 279 IPR023409 -
Cco11g1462 294 Gene3D - 29 291 IPR036815 -
Cco11g1462 294 FunFam 14-3-3 protein epsilon 46 291 - -
Cco11g1462 294 MobiDBLite consensus disorder prediction 14 28 - -
Cco11g1462 294 PANTHER 14-3-3 PROTEIN 49 283 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 224 250 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 197 223 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 131 155 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 162 184 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 82 111 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 251 280 IPR000308 -
Cco11g1462 294 PIRSF 14-3-3 44 291 IPR000308 -
Cco11g1462 294 SMART 1433_4 50 291 IPR023410 -
Cco11g1462 294 Pfam 14-3-3 protein 57 278 IPR023410 -
Cco11g1462 294 MobiDBLite consensus disorder prediction 1 30 - -
Cco11g1462 294 SUPERFAMILY 14-3-3 protein 49 280 IPR036815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1462 K06630 - - csv:101213169 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1195 Cco-Chr8:23681446 Cco11g1462 Cco-Chr11:27431338 3.60E-102 dispersed
Cco11g1462 Cco-Chr11:27431338 Cco11g1473 Cco-Chr11:27549261 5.90E-90 dispersed
Cco11g1462 Cco-Chr11:27431338 Cco08g1263 Cco-Chr8:24433952 2.30E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g412 . . . . . . . . Cmo05g00524 . Cma01g01607 . Car01g01226 . . . Cpe07g00087 Bhi04g00762 . . . Hepe10g0497 . Lcy13g1561 Cla08g01110 Cam08g1563 Cec08g1137 Cco08g1263 Clacu08g1267 . Cre08g1047 . . Cone8ag0206 Cone12ag0218 Lsi04g02235 Csa03g04446 Chy04g00255 Cme03g01863 . . . . . . . . . Cmo01g01654 . Cma12g00101 Cma05g00501 Car05g00448 . . Cpe02g00372 . . . . . . . Cla11g01382 Cam11g1440 Cec11g1466 Cco11g1462 Clacu11g1597 Cmu11g1416 Cre11g1836 Lsi08g00896 Csa02g02151 Chy03g01367 Cme04g00285
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1276 . 4 242 14-3-3 family AT4G09000 90.8 6.6e-119 424.1
Cco11g1473 . 5 242 14-3-3 family AT4G09000 90.3 3.3e-118 421.8
Cco07g1702 . 22 257 14-3-3 family AT4G09000 86.9 2.1e-112 402.5
Cco11g1495 . 11 246 14-3-3 family AT4G09000 76.3 1.1e-100 363.6
Cco08g1338 . 10 246 14-3-3 family AT4G09000 74.7 3.8e-98 355.1
Cco07g0275 . 7 238 14-3-3 family AT4G09000 72.6 4.8e-93 338.2
Cco05g2645 . 4 239 14-3-3 family AT4G09000 72.3 1.5e-91 333.2
Cco08g1195 . 4 239 14-3-3 family AT4G09000 71.8 7.6e-91 330.9
Cco11g1462 . 50 281 14-3-3 family AT4G09000 73.1 1.1e-89 327.0
Cco08g1263 . 5 236 14-3-3 family AT4G09000 70.1 1.4e-89 326.6
Cco08g1276 . 6 261 14-3-3 family AT1G78300 89.8 1.5e-124 442.6
Cco11g1473 . 5 258 14-3-3 family AT1G78300 91.0 1.5e-124 442.6
Cco07g1702 . 24 269 14-3-3 family AT1G78300 87.4 1.5e-116 416.0
Cco11g1495 . 11 247 14-3-3 family AT1G78300 76.4 3.9e-101 364.8
Cco08g1338 . 11 247 14-3-3 family AT1G78300 75.5 1.6e-99 359.4
Cco07g0275 . 7 247 14-3-3 family AT1G78300 71.6 2.1e-94 342.4
Cco08g1195 . 8 257 14-3-3 family AT1G78300 70.6 5.1e-93 337.8
Cco05g2645 . 8 255 14-3-3 family AT1G78300 70.8 8.7e-93 337.0
Cco08g1263 . 1 250 14-3-3 family AT1G78300 67.9 5.6e-92 334.3
Cco11g1462 . 46 288 14-3-3 family AT1G78300 69.4 4.0e-90 328.2
Cco07g1702 . 22 275 14-3-3 family AT5G38480 90.6 1.2e-123 439.5
Cco08g1276 . 6 252 14-3-3 family AT5G38480 85.8 1.0e-114 409.8
Cco11g1473 . 6 252 14-3-3 family AT5G38480 85.4 2.3e-114 408.7
Cco11g1495 . 10 251 14-3-3 family AT5G38480 73.5 3.0e-98 355.1
Cco08g1338 . 10 251 14-3-3 family AT5G38480 74.0 3.3e-97 351.7
Cco05g2645 . 8 255 14-3-3 family AT5G38480 73.6 4.5e-94 341.3
Cco07g0275 . 7 247 14-3-3 family AT5G38480 72.4 2.2e-93 339.0
Cco08g1263 . 5 247 14-3-3 family AT5G38480 72.2 6.5e-93 337.4
Cco08g1195 . 8 255 14-3-3 family AT5G38480 72.0 8.5e-93 337.0
Cco11g1462 . 50 293 14-3-3 family AT5G38480 71.1 1.5e-89 326.2
Cco08g1276 . 3 242 14-3-3 family AT1G35160 90.0 1.4e-118 422.9
Cco11g1473 . 4 242 14-3-3 family AT1G35160 89.5 6.8e-118 420.6
Cco07g1702 . 22 256 14-3-3 family AT1G35160 86.8 9.5e-112 400.2
Cco11g1495 . 11 246 14-3-3 family AT1G35160 77.1 5.8e-101 364.4
Cco08g1338 . 1 246 14-3-3 family AT1G35160 73.2 4.6e-98 354.8
Cco07g0275 . 2 237 14-3-3 family AT1G35160 71.4 1.3e-92 336.7
Cco05g2645 . 8 239 14-3-3 family AT1G35160 73.1 2.4e-91 332.4
Cco08g1195 . 8 239 14-3-3 family AT1G35160 72.6 1.2e-90 330.1
Cco11g1462 . 45 281 14-3-3 family AT1G35160 72.0 1.0e-89 327.0
Cco08g1263 . 5 236 14-3-3 family AT1G35160 69.7 1.3e-89 326.6
Cco07g1702 . 21 270 14-3-3 family AT5G16050 86.0 1.2e-116 416.4
Cco08g1276 . 3 253 14-3-3 family AT5G16050 79.3 1.2e-108 389.8
Cco11g1473 . 4 251 14-3-3 family AT5G16050 79.5 5.4e-106 380.9
Cco08g1338 . 10 248 14-3-3 family AT5G16050 71.1 2.0e-92 335.9
Cco11g1495 . 10 248 14-3-3 family AT5G16050 69.9 1.1e-90 330.1
Cco08g1195 . 3 246 14-3-3 family AT5G16050 66.3 2.4e-85 312.4
Cco07g0275 . 1 246 14-3-3 family AT5G16050 65.5 5.3e-85 311.2
Cco05g2645 . 3 246 14-3-3 family AT5G16050 65.0 9.0e-85 310.5
Cco08g1263 . 2 247 14-3-3 family AT5G16050 64.9 2.0e-84 309.3
Cco11g1462 . 50 287 14-3-3 family AT5G16050 66.3 1.2e-81 300.1
Cco08g1338 . 9 246 14-3-3 family AT5G10450 87.0 9.4e-114 406.8
Cco11g1495 . 9 246 14-3-3 family AT5G10450 85.3 3.3e-111 398.3
Cco11g1473 . 1 242 14-3-3 family AT5G10450 79.4 1.4e-104 376.3
Cco08g1276 . 3 251 14-3-3 family AT5G10450 76.8 1.8e-104 375.9
Cco07g1702 . 24 275 14-3-3 family AT5G10450 74.3 4.4e-103 371.3
Cco07g0275 . 1 238 14-3-3 family AT5G10450 67.6 5.2e-88 321.2
Cco08g1263 . 5 236 14-3-3 family AT5G10450 67.2 2.4e-85 312.4
Cco05g2645 . 3 239 14-3-3 family AT5G10450 66.3 7.0e-85 310.8
Cco11g1462 . 50 281 14-3-3 family AT5G10450 67.7 2.7e-84 308.9
Cco08g1195 . 3 239 14-3-3 family AT5G10450 65.4 2.3e-83 305.8
Cco07g1702 . 20 277 14-3-3 family AT3G02520 91.1 8.5e-128 453.4
Cco08g1276 . 6 252 14-3-3 family AT3G02520 87.1 8.0e-118 420.2
Cco11g1473 . 5 258 14-3-3 family AT3G02520 84.8 5.2e-117 417.5
Cco08g1338 . 10 248 14-3-3 family AT3G02520 75.7 7.5e-100 360.5
Cco11g1495 . 10 248 14-3-3 family AT3G02520 75.3 7.5e-100 360.5
Cco08g1195 . 8 257 14-3-3 family AT3G02520 69.4 3.0e-93 338.6
Cco05g2645 . 8 256 14-3-3 family AT3G02520 68.9 4.0e-93 338.2
Cco08g1263 . 1 249 14-3-3 family AT3G02520 69.4 1.5e-92 336.3
Cco07g0275 . 4 238 14-3-3 family AT3G02520 71.7 1.7e-91 332.8
Cco11g1462 . 46 286 14-3-3 family AT3G02520 71.6 8.3e-91 330.5
Cco08g1338 . 9 246 14-3-3 family AT5G65430 88.7 1.2e-115 412.9
Cco11g1495 . 9 246 14-3-3 family AT5G65430 84.0 3.2e-111 398.3
Cco11g1473 . 1 242 14-3-3 family AT5G65430 80.2 4.5e-105 377.9
Cco08g1276 . 8 242 14-3-3 family AT5G65430 80.5 8.4e-104 373.6
Cco07g1702 . 24 257 14-3-3 family AT5G65430 79.1 3.2e-103 371.7
Cco07g0275 . 1 238 14-3-3 family AT5G65430 69.3 2.0e-89 325.9
Cco05g2645 . 8 239 14-3-3 family AT5G65430 69.8 4.2e-87 318.2
Cco08g1263 . 5 236 14-3-3 family AT5G65430 69.4 1.6e-86 316.2
Cco11g1462 . 45 281 14-3-3 family AT5G65430 68.3 1.0e-85 313.5
Cco08g1195 . 8 239 14-3-3 family AT5G65430 68.5 8.7e-85 310.5
Cco07g0275 . 1 261 14-3-3 family AT2G42590 81.4 6.4e-118 420.6
Cco08g1263 . 3 242 14-3-3 family AT2G42590 77.9 4.0e-104 374.8
Cco05g2645 . 6 257 14-3-3 family AT2G42590 75.5 6.8e-104 374.0
Cco08g1195 . 6 253 14-3-3 family AT2G42590 75.4 9.8e-103 370.2
Cco11g1462 . 48 290 14-3-3 family AT2G42590 74.9 2.4e-101 365.5
Cco07g1702 . 24 264 14-3-3 family AT2G42590 73.0 1.3e-91 333.2
Cco08g1276 . 8 248 14-3-3 family AT2G42590 70.5 3.9e-91 331.6
Cco11g1473 . 8 245 14-3-3 family AT2G42590 71.4 1.9e-90 329.3
Cco11g1495 . 11 248 14-3-3 family AT2G42590 65.1 1.1e-82 303.5
Cco08g1338 . 11 248 14-3-3 family AT2G42590 64.7 1.6e-81 299.7
Cco08g1263 . 1 241 14-3-3 family AT1G22300 80.1 2.8e-104 375.2
Cco07g0275 . 6 242 14-3-3 family AT1G22300 78.5 1.8e-103 372.5
Cco05g2645 . 5 244 14-3-3 family AT1G22300 77.5 3.4e-102 368.2
Cco08g1195 . 5 244 14-3-3 family AT1G22300 76.7 1.7e-101 365.9
Cco11g1462 . 46 286 14-3-3 family AT1G22300 76.3 6.0e-99 357.5
Cco07g1702 . 24 262 14-3-3 family AT1G22300 71.5 6.0e-91 330.9
Cco08g1276 . 8 246 14-3-3 family AT1G22300 70.3 9.6e-89 323.6
Cco11g1473 . 8 245 14-3-3 family AT1G22300 69.3 2.4e-87 318.9
Cco11g1495 . 11 248 14-3-3 family AT1G22300 65.5 4.3e-81 298.1
Cco08g1338 . 11 248 14-3-3 family AT1G22300 64.7 3.1e-79 292.0
Cco07g0275 . 6 246 14-3-3 family AT1G34760 80.5 2.5e-105 378.6
Cco05g2645 . 5 247 14-3-3 family AT1G34760 80.2 9.6e-105 376.7
Cco08g1263 . 1 245 14-3-3 family AT1G34760 80.0 1.6e-104 375.9
Cco08g1195 . 5 247 14-3-3 family AT1G34760 79.4 6.2e-104 374.0
Cco11g1462 . 46 289 14-3-3 family AT1G34760 77.5 7.9e-99 357.1
Cco07g1702 . 24 266 14-3-3 family AT1G34760 72.0 1.9e-89 325.9
Cco08g1276 . 8 245 14-3-3 family AT1G34760 72.3 5.7e-89 324.3
Cco11g1473 . 8 249 14-3-3 family AT1G34760 69.4 4.8e-88 321.2
Cco11g1495 . 11 247 14-3-3 family AT1G34760 63.7 1.8e-79 292.7
Cco08g1338 . 11 247 14-3-3 family AT1G34760 64.1 5.9e-78 287.7
Cco05g2645 . 2 254 14-3-3 family AT1G26480 86.6 1.6e-118 422.5
Cco08g1195 . 2 254 14-3-3 family AT1G26480 85.8 8.1e-118 420.2
Cco07g0275 . 3 242 14-3-3 family AT1G26480 80.8 4.4e-108 387.9
Cco08g1263 . 2 249 14-3-3 family AT1G26480 77.4 2.7e-105 378.6
Cco11g1462 . 48 287 14-3-3 family AT1G26480 77.9 4.0e-101 364.8
Cco08g1276 . 8 260 14-3-3 family AT1G26480 72.0 5.3e-93 337.8
Cco11g1473 . 8 247 14-3-3 family AT1G26480 73.8 1.3e-91 333.2
Cco07g1702 . 21 272 14-3-3 family AT1G26480 72.0 4.9e-91 331.3
Cco11g1495 . 11 244 14-3-3 family AT1G26480 67.1 3.2e-82 302.0
Cco08g1338 . 11 244 14-3-3 family AT1G26480 66.2 2.3e-80 295.8
Cco05g2645 . 5 237 14-3-3 family AT1G78220 52.6 9.5e-65 243.8
Cco07g0275 . 6 236 14-3-3 family AT1G78220 51.3 1.0e-63 240.4
Cco08g1263 . 1 234 14-3-3 family AT1G78220 50.6 8.8e-63 237.3
Cco08g1195 . 5 237 14-3-3 family AT1G78220 50.9 2.0e-62 236.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148