Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1462 ATGTTGACTGTTTGTCTCCGCAGTGGAGCCCAGCCCAAGCCTGAGTACAAGCCAAGTACAAACCACCAGGGTGCAAATTCGAAGCCAAGATTTCAGTTTCGGTTGGAGAAGCTTCAGAAAGAGAGGAAAAAAGCGATGGCGAAAGAGAGAGAACTACTCGTTTACTCAGCTAGATTGGCAGAGCAAGCTGAGAGATACGAAGAGATGGTTGAGAAAATGGAGAAAGTTGCAAAGTTAAACGTGGAATTGACTGTGGAAGAGAGAAATCTGCTATCTGTTGGTTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTATCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGGTTACAGGCATCGGGTTGAAAATGAGCTCTCTAAAATATGCAGTGACATATTGTCGATCATTGACCAGCATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGACTATTGTCGGTATTTGGCTGAGTTTAAATCTGGTGACGAGCGTAAACAAGTTGCAGATCAATCATTAAAGTCTTATGAGGCTGCATCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCGCTGAACTTCTCTGTTTTCTACTATGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCCAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAGTGAAGAATCCTACAAGGACAGTACCCTTATTATGCAACTCCTTAGGGACAACCTGACTCTGTGGACTTCTGATCTTCCAGACGAAGGTGGAGAGCAGTCCAATGCTGATGAACTTTAG 885 43.28 MLTVCLRSGAQPKPEYKPSTNHQGANSKPRFQFRLEKLQKERKKAMAKERELLVYSARLAEQAERYEEMVEKMEKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIGYRHRVENELSKICSDILSIIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVADQSLKSYEAASAIANSDLSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSNADEL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27431338 27435484 - CcPI632755_11g014620.1 Cco11g1462 192698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1462 294 ProSitePatterns 14-3-3 proteins signature 1. 88 98 IPR023409 -
Cco11g1462 294 Coils Coil 56 79 - -
Cco11g1462 294 Coils Coil 238 258 - -
Cco11g1462 294 ProSitePatterns 14-3-3 proteins signature 2. 260 279 IPR023409 -
Cco11g1462 294 Gene3D - 29 291 IPR036815 -
Cco11g1462 294 FunFam 14-3-3 protein epsilon 46 291 - -
Cco11g1462 294 MobiDBLite consensus disorder prediction 14 28 - -
Cco11g1462 294 PANTHER 14-3-3 PROTEIN 49 283 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 224 250 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 197 223 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 131 155 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 162 184 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 82 111 IPR000308 -
Cco11g1462 294 PRINTS 14-3-3 protein zeta signature 251 280 IPR000308 -
Cco11g1462 294 PIRSF 14-3-3 44 291 IPR000308 -
Cco11g1462 294 SMART 1433_4 50 291 IPR023410 -
Cco11g1462 294 Pfam 14-3-3 protein 57 278 IPR023410 -
Cco11g1462 294 MobiDBLite consensus disorder prediction 1 30 - -
Cco11g1462 294 SUPERFAMILY 14-3-3 protein 49 280 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1195 Cco-Chr8:23681446 Cco11g1462 Cco-Chr11:27431338 3.60E-102 dispersed
Cco11g1462 Cco-Chr11:27431338 Cco11g1473 Cco-Chr11:27549261 5.90E-90 dispersed
Cco11g1462 Cco-Chr11:27431338 Cco08g1263 Cco-Chr8:24433952 2.30E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1462 K06630 - csv:101213169 450.284