Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1470 ATGCGCCGCACTATTACACCTCATCCTGCTCTCCCTCTTGCAATAAATACCCATTTTCTTCTCTCCATTTCTCTTCATCGTCTTCTTCTTCCTCCTTCTTCCCTTCCATTTCTCCCCATCATGTCCTCCATTACTCTTCTTCTTCTCCTCTTACTCTCTTCTTCCGTTCACTCCATCTCCGCCACCGTCGCTGTCGCCGCCGCCAGAAACCTTGCCTTCATAGACCAAGCTCTCGATCTCGACTCCTTCCCCTTCGAATACCACGGCGGCCCTCTTCTCTCCGGCAACGTAACCATCAATCTCATTTGGTATGGCAATTTCAATCCCTCCCAGAAATCCATTGTTACTGATTTCATCACTTCTATTTCTTCTTCTTCTTCTTCCAAATCAATCATTTCCTCTCATCCCTCTGTTTCCACTTGGTGGAACGCCATTAAAAAATTTTACAATCTCGCTAAGAAGTCCTCCCGTTTATCTCTCTCATTGGGATTACATATTCTCGACCCCAAATATTCCCTTGGAAAATCTCTAACCGATCGTCATATTCTTTCTCTGGCCTCCAGAGGCAGGCAGAAATATGCAATAAATGTTGTTTTAACGGCGGCGGATGTGACCGTCGACGGATTCTGTTTTAACAAATGTGGGTCTCATGGGATTTCGGTCGGAGCTCCGATTAAGGGGAAGAGGTACAAATTTGGGTATATTTGGGTGGGAAATTCAGCGACCCAATGTCCAGGGCAGTGTGCTTGGCCGTTTCACCGGCCGGTGTACGGTCCTCAGAATCCGCCGTTGGTGCCACCGAATAAGGATGTGGGAATGGACGGCATTATAATAAACCTGGCGAGTCTTCTCGCCGGAACCGCGACGAATCCGTTCGGGAATGGGTTCTATCAAGGCTCCAAGGAAGCACCGCTGGAGGCGGCGTCGGCCTGCACCGGAATATTCGGGAAAGGAGCTTTTCCGGGATACCCCGGGGAGCTTCTGGTGGACCGCGCCACCGGAGCGAGTTACAATGCGAACGGTGGCAATGGGCGGAAATATCTGCTTCCGGCGTTGTTTAATCCGATCACTTCCACTTGTTCAACTCTGGTTTGA 1095 49.68 MRRTITPHPALPLAINTHFLLSISLHRLLLPPSSLPFLPIMSSITLLLLLLLSSSVHSISATVAVAAARNLAFIDQALDLDSFPFEYHGGPLLSGNVTINLIWYGNFNPSQKSIVTDFITSISSSSSSKSIISSHPSVSTWWNAIKKFYNLAKKSSRLSLSLGLHILDPKYSLGKSLTDRHILSLASRGRQKYAINVVLTAADVTVDGFCFNKCGSHGISVGAPIKGKRYKFGYIWVGNSATQCPGQCAWPFHRPVYGPQNPPLVPPNKDVGMDGIIINLASLLAGTATNPFGNGFYQGSKEAPLEAASACTGIFGKGAFPGYPGELLVDRATGASYNANGGNGRKYLLPALFNPITSTCSTLV 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27531378 27532472 + CcPI632755_11g014700.1 Cco11g1470 192706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1470 364 PANTHER PROTEIN EXORDIUM-LIKE 5 47 363 IPR006766 -
Cco11g1470 364 Pfam Phosphate-induced protein 1 conserved region 86 363 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1396 Cco-Chr9:17744689 Cco11g1470 Cco-Chr11:27531378 1.70E-55 dispersed
Cco11g1468 Cco-Chr11:27520976 Cco11g1470 Cco-Chr11:27531378 1.40E-118 dispersed
Cco11g1469 Cco-Chr11:27524804 Cco11g1470 Cco-Chr11:27531378 1.80E-118 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g433 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1210 . . . Chy04g00247 . Blo17g00115 . . . . . Bma01g01400 . . . . . . . . . . . . . . . . . Cla11g01390 Cam11g1446 Cec11g1473 Cco11g1470 Clacu11g1604 Cmu11g1423 . . . . Cme04g00276