Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1472 ATGGGTGTGGGTGAGATAGCTCTCTCCCTCTTTTCCCTTCTGCTTTTGCTTTGTGTTCCTGTTCTCTGCCGTTTAAGCCGCGGTCGAGAGATGGCAGAGGGAAGCGATTTCAGGCATTGGGACGAGCTAATACCAGACGCTTTGGGGCTAATCTTCAGTAAACTTTCACTCCAAGAGAAACTCACCGTTATTCCTAGGGTCTGCAAATCATGGGCCAAAGCAGTACTCGGACCTTACTGCTGGCAAGAGATTGATATTGAAGAATGGAGCAGTCGAAGGCAACTCGACAATGTTGATCGAATGCTTCAAATGCTGATAAATCGAAGTGGCGGGTCACTACGCAAGCTCTGCGTTACTGGTCTTCATAATAGCAGCATTTTCTTCTCCATCGCTGATCATGCTGGTTCTCTTCAAACATTGCGACTGCCAAGGAGCAATATAAGCGATGCTGTAGCAGAACAAATTGCCGGAAGGCTATGTGCAGTTACTTTTTTGGATCTAAGCTATTGTGATAAAATCAGTGCCTGTGGTTTAGAGTCCATAGGAAAGAATTGCAAAGCTTTAGTTGGAATGTGTCGTAACTTGCATCCGCTACATACAGCAGGTATATCCTCCCCGGACGATGAAGCTTATACTATTGCAGCTACAATGCCGAAACTGAAGCATCTTGAAATGGCTTATCACCCTCTTAGCACCAAAAGTTTACTGACAATACTTTCAAGCTGTCCCAACCTCGAGTTCCTCGATTTGAGAGGGTGTTGGGATGTAAGGCTAGAAGACAAGTTTCTTGCAGAGAAGTTCCCAAAACTAAGAGTTTTGGGGCCTCTCGTTAGGGACGTCTACGAGAGAAACGAATGGGATGAAGGCTCAGACTACTCATACATATCAGACGACTTGGCATGGGACTTTTCTGCAGATTACTTCGACGATGCTGGTAGTTACGACGATCCATGGGACGATGAAGGCAGACTAGAAGGACTAGAGTTGAGATTTTATGAAGGAATTGATGAAGATAATGAAGCCTTTGGTTGGCCTGCCTCCCCTTAA 1047 45.56 MGVGEIALSLFSLLLLLCVPVLCRLSRGREMAEGSDFRHWDELIPDALGLIFSKLSLQEKLTVIPRVCKSWAKAVLGPYCWQEIDIEEWSSRRQLDNVDRMLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEAYTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPNLEFLDLRGCWDVRLEDKFLAEKFPKLRVLGPLVRDVYERNEWDEGSDYSYISDDLAWDFSADYFDDAGSYDDPWDDEGRLEGLELRFYEGIDEDNEAFGWPASP 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27541128 27544392 + CcPI632755_11g014720.1 Cco11g1472 192708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1472 348 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 37 288 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Cco11g1472 348 FunFam F-box protein FBW2 39 81 - -
Cco11g1472 348 SUPERFAMILY RNI-like 66 273 - -
Cco11g1472 348 Gene3D Ribonuclease Inhibitor 35 276 IPR032675 -
Cco11g1472 348 Pfam F-box domain 40 82 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0847 Cco-Chr10:17797454 Cco11g1472 Cco-Chr11:27541128 8.20E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g435 . . . . Bpe02g00115 . . . . . Cma01g01614 Cma09g00566 . . . Cpe06g00430 . . . . . . . . . . . . . . . . . Cone17ag1208 Cone20ag0517 Lsi04g02245 Csa03g04456 Chy04g00246 . . . Bda11g00772 . . Bpe14g00460 . Bma02g00135 . Cmo01g01660 . . . . . . Cpe02g00366 Bhi09g02449 . . . . . . Cla11g01391 Cam11g1447 Cec11g1475 Cco11g1472 Clacu11g1606 Cmu11g1425 Cre11g1845 . . . Cme04g00275