Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1473 ATGGCGGTCACCTCTTCCCCTCGCGAGGAGTATGTTTACATGGCCAAGCTTGCCGAGCAAGCTGAGCGCTACGAGGAGATGGTCGAGTTTATGGAGAAGGTCTCCGCCGCTACAGACAACGAGGAGCTCACCGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAGAATGTTATTGGGGCGCGTAGAGCCTCCTGGAGGATTATTTCCTCCATTGAACAGAAGGAGGAGAGCCGAGGGAATGATGATCATGTCTCCGTTATCCGAGAATACAGATCCAAGATCGAGACTGAGCTCTCCAACATCTGTGATGGGATCCTTAAGCTTCTTGACTCCCGTCTCATTTCCTCTGCTGCGTCTGGTGACTCCAAGGTGTTTTATCTCAAGATGAAGGGAGATTATCATAGATACCTTGCTGAATTCAAGACCGGAGCCGAGCGGAAGGAAGCTGCCGAAAGTACTCTCACTGCTTATAAATCTGCACAGGATATTGCAAATGCTGAACTTGCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAACTTCTCAGTGTTCTATTATGAGATTCTGAATTCCCCTGATCGTGCTTGCAGCCTTGCCAAACAGGCATTCGATGAAGCAATTGCCGAGTTGGATACACTGGGCGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGGGACAACCTCACTCTATGGACTTCGGACATGCAGGATGATGGAGATGAGATTAAAGAAGCAGCTCCCAAACGTGACGATGAATAG 777 49.03 MAVTSSPREEYVYMAKLAEQAERYEEMVEFMEKVSAATDNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIREYRSKIETELSNICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDEIKEAAPKRDDE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27549261 27551248 + CcPI632755_11g014730.1 Cco11g1473 192709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1473 258 PIRSF 14-3-3 2 250 IPR000308 -
Cco11g1473 258 SMART 1433_4 8 250 IPR023410 -
Cco11g1473 258 FunFam 14-3-3 protein epsilon 4 251 - -
Cco11g1473 258 Coils Coil 14 34 - -
Cco11g1473 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Cco11g1473 258 Gene3D - 1 252 IPR036815 -
Cco11g1473 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cco11g1473 258 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco11g1473 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Cco11g1473 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cco11g1473 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cco11g1473 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cco11g1473 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cco11g1473 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cco11g1473 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cco11g1473 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1702 Cco-Chr7:31024817 Cco11g1473 Cco-Chr11:27549261 3.20E-117 dispersed
Cco08g1338 Cco-Chr8:25263855 Cco11g1473 Cco-Chr11:27549261 1.40E-100 dispersed
Cco11g1462 Cco-Chr11:27431338 Cco11g1473 Cco-Chr11:27549261 5.90E-90 dispersed
Cco11g1473 Cco-Chr11:27549261 Cco11g1495 Cco-Chr11:27783990 1.00E-101 dispersed
Cco11g1473 Cco-Chr11:27549261 Cco08g1276 Cco-Chr8:24564769 4.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1473 K06630 - csv:101210822 494.967