Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1476 ATGGCACTCTCCTTCCTCTCTTCCGTGCCTTCCTTTCTCCCTCTCCTTCCTCCTCCTCAAGCCGCCCTCTCCCCCGCTACTGCATTTCCTTCGCACACTGTCAGAGTTCGTTGTGCTCAGATCCAAACGGATGCTAACAACGAGGATCGGTTTAGTAGAAGAGATGTTCTTCAAGGTTTTGGTGGTACTCTTGCTCTGGGATTAATGGTGAACTCTGACCTAATGGTGGAACCGGCTTATGCTGCTGATTTAATACAGCGAAGACAGCGATCTGACTTTTTATCAAATATCAAGGGGACCCTTTTTACAGCTATTAAGAAAAATCCAGACGTTGTTCCCTCCCTTTTAACATTGGCACTAAATGATGCCGTGACTTACGACAAGGCCACTAAATCTGGAGGGCCAAATGGATCCATCCGCTTCAGTTCAGAGATTTCCAGACCTGAAAATGAGAAGTTGTCTGCTGCTCTGAGTTTATTAGAGGAAGCAAAGAAGGAGATAGATTCTTATTCAAAGGGTGGACCTATTTCCTACGCAGATCTTATTCAATTGGCAGCACAAAGTGCCACTAAATCCACCTTTCTAGCGTCTGCCATCAGAAAATGTGGTGGGAATGAAGAAAAAGGAAATTTGTTATATACTGCGTATGGCTCCAACGGGCAGTGGGGCTTGTTCGAAAGGCAATTTGGAAGATCAGATGCTGAAGCGCCTGATCCTGAGGGAAGGGTTCCCATATGGGGGAAAGCTAGCGTGCAGGAAATGAAAGATAAGTTCTCTGCTATTGGATTTGGTCCCCGACAGCTAGCTGTTCTGTCTGCATTTCTGGGTCCTGATCAGGCAGCAACTGAGGAGTTACTAGCCTCAGATCCTGATGTTTTTCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTTGATCTAATAACCACTCTTACAAAAATAAGTAGCTTGGGACAGCAGATAAATTACGAGGCTTACACCTATCCAGTTAAGAAAGTTGATTTGAGCAAACTCAAGTTATAG 1047 44.89 MALSFLSSVPSFLPLLPPPQAALSPATAFPSHTVRVRCAQIQTDANNEDRFSRRDVLQGFGGTLALGLMVNSDLMVEPAYAADLIQRRQRSDFLSNIKGTLFTAIKKNPDVVPSLLTLALNDAVTYDKATKSGGPNGSIRFSSEISRPENEKLSAALSLLEEAKKEIDSYSKGGPISYADLIQLAAQSATKSTFLASAIRKCGGNEEKGNLLYTAYGSNGQWGLFERQFGRSDAEAPDPEGRVPIWGKASVQEMKDKFSAIGFGPRQLAVLSAFLGPDQAATEELLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSLGQQINYEAYTYPVKKVDLSKLKL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27568360 27573810 - CcPI632755_11g014760.1 Cco11g1476 192712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1476 348 Pfam Peroxidase 99 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g1476 348 Gene3D - 81 246 - -
Cco11g1476 348 Gene3D - 247 313 - -
Cco11g1476 348 SUPERFAMILY Heme-dependent peroxidases 79 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g1476 348 FunFam Thylakoid lumenal 29 kDa protein, chloroplastic 249 313 - -
Cco11g1476 348 PRINTS Plant ascorbate peroxidase signature 112 127 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g1476 348 PRINTS Plant ascorbate peroxidase signature 144 168 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g1476 348 PRINTS Plant ascorbate peroxidase signature 272 297 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g1476 348 PRINTS Plant ascorbate peroxidase signature 130 140 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g1476 348 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 280 342 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009535(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cco11g1476 348 CDD plant_peroxidase_like 97 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1476 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1476 Cco-Chr11:27568360 Cco03g0211 Cco-Chr3:2186126 3.50E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g445 . . . Bda03g00483 . Bpe04g00436 . . . . Cma01g01622 Cma09g00570 Car01g01236 . . Cpe06g00433 . . . . . . . . . . . . . . . Cone4ag1323 . . . . Csa03g04459 Chy04g00242 . . . . . . . . . Sed13g2145 Cmo01g01665 Cmo09g00557 . . . Car09g00497 . Cpe02g00362 Bhi09g02455 Tan01g3804 Cmetu04g1099 . Hepe01g2140 Mch11g0679 . Cla11g01395 Cam11g1451 Cec11g1479 Cco11g1476 Clacu11g1610 Cmu11g1429 Cre11g1849 . . . Cme04g00270
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009724 1 2 0 0 1 0 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 32