Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1480 ATGGCGCTCCGTTTTGAGATTATGGGAAGATTTAATCGTGCTCGTGCTGCACGACTCACTCTCCCCCACTTTATCTGCCAAACACCTCTGTTTATGCCAGTGGGAACACAAGGGACAATTAAAGGGTTGACAACTCAGCAGCTTGAAGAGATTGGTTGCCAAATTATACTTGGAAATACATATCATTTAGCACTTCGTCCCACTTCCGAGCTTATTGATGAATTGGGAGGTCTCCACAAGTTTATGAACTGGCCCAGAGCAATGCTTACTGATTCTGGCGGGTTTCAAATGGTTTCATTGTTACATTTAGCTGATATCACCGAAAAAGGTGTAACATTTCAGTCTCCAGTTGATGGGAAGCCAATGCTTTTGACTCCTGAGGAATCAATTCAAATTCAAAACAGAATAGGAGCAGATATTATTATGGCTCTTGATGATGTAGTAAAAACAACCATTACAGGTCCAAGAATTGAGGAGGCCATGTACCGTACTCTTCGTTGGATAGACAGATGTATAGCAGCACACAAGAGACCTCATGAGCAGAATTTATTTGGTATTGTGCAAGGTGGTTTGGATCCAGTCCTAAGGGACATATGCGTTAGAGGCTTGGTTGACCGAAATTTACCAGGGTATGCGATTGGCGGTCTGGCAGGTGGTGAAGATAAAGATTCATTTTGGCGTGTTGTTGCCCAATGCACTGCTTCACTGCCTGAGGACAAACCTAGATATGTTATGGGTGTTGGTTATCCACTGGACATTGTCGTATGTAGTGCTTTAGGTGCCGACATGTATGACTGTGTTTATCCAACCCGTACTGCTCGTTTTGGCACAGCACTCATACCTGAGGGAGTTCTAAAACTAAAACACCAAGCGATGGCTGATGATACTCGACCCATTGATCCTACATGTGATTGCATGGTCTGCAGGAACTATACTAGGGCCTACATCCATTGTCTTGTTACAAAAGATGCTATGGGTTCTCAGCTACTCTCATTTCACAATTTGTATTACATGATGAAGCTTAGCAGAGATCTACATTCTTCAATTGTTCAGGGGCAATTCCCAGAGTTCGTTCGCAAGTTCTTGCTGAGAATGTTCCCTCAGGGCGATGTCCCGCAATGGGTCTGCAATGCTATGGAGGTTGCCGTGATAATGAAGAGATTTGCCCACTCAGATTCCTTGGATTCTTTCATCACCATCTTCTCCCCTAATGATCAACCGAGCTCCAAAACCATAGGCGGCTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGCGAAGACGGCGGCAACGGTGGCGGGTCAGCACCGGAGAGAAAACGGCGGCTGAAGGTGGATCAAGTGAAGGTCTTGGAGAGGCATTTTGAAGTGGAAAACAAGTTAGAACCAGAGAGAAAAATGAAGATTGCAGCTGAATTAGAGCTTGAACCAAAGCAAGTTACAATTTGGTTCCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAGAGAGATTATGGAGTTCTTAAAGTCAATTACGATGCTCTTAAACTGGACTATGATGTTCTTGAGAAAGAGAATGCTTCTCTTGCTTCAAAGGTCAAAGAGTTGAGGGAAAAAGTAAGGAGAGATGGAACAGAGATGAAAATTCAAAGAGAAGTGAAAAATGGGTCAGTGGAGAGAGATTCAAACAGAGATGGGAATTCATATATTTCCATGTTGAATTGCTTTGAATTTTCTGGGAAAGTTTATGAGAATCAAACCCAGTTTACAAAGGCAATTAATGATGATGATGATGATCAAAGTTTGGTTAATATAGAAGAGCCTTGCGATTTCTGTTCTGTTGATCAAGCTCCCTCTCTCCACTGTGGAAATCAACATATAAAAAGGAATGAAAAAGGAAAAAAAAAAAAAAACCTTGTGGACCTCATTCTTGGTTTTTGTTTGCGAAAAATCGATTTTTAA 1965 42.19 MALRFEIMGRFNRARAARLTLPHFICQTPLFMPVGTQGTIKGLTTQQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRAMLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHEQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHQAMADDTRPIDPTCDCMVCRNYTRAYIHCLVTKDAMGSQLLSFHNLYYMMKLSRDLHSSIVQGQFPEFVRKFLLRMFPQGDVPQWVCNAMEVAVIMKRFAHSDSLDSFITIFSPNDQPSSKTIGGYSKEFQAMLDSLEEEDNSEDGGNGGGSAPERKRRLKVDQVKVLERHFEVENKLEPERKMKIAAELELEPKQVTIWFQNRRARWKTKQLERDYGVLKVNYDALKLDYDVLEKENASLASKVKELREKVRRDGTEMKIQREVKNGSVERDSNRDGNSYISMLNCFEFSGKVYENQTQFTKAINDDDDDQSLVNIEEPCDFCSVDQAPSLHCGNQHIKRNEKGKKKKNLVDLILGFCLRKIDF 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27610251 27623584 - CcPI632755_11g014800.1 Cco11g1480 192716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1480 654 Pfam Queuine tRNA-ribosyltransferase 13 364 IPR002616 GO:0006400(InterPro)|GO:0016763(InterPro)
Cco11g1480 654 NCBIfam tRNA guanosine(34) transglycosylase Tgt 5 364 IPR004803 GO:0008479(InterPro)|GO:0101030(InterPro)
Cco11g1480 654 Hamap Queuine tRNA-ribosyltransferase [tgt]. 3 364 IPR004803 GO:0008479(InterPro)|GO:0101030(InterPro)
Cco11g1480 654 ProSitePatterns 'Homeobox' domain signature. 475 498 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco11g1480 654 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 2 384 - GO:0005829(PANTHER)|GO:0008479(PANTHER)|GO:0101030(PANTHER)
Cco11g1480 654 NCBIfam tRNA-guanine transglycosylase 5 364 IPR002616 GO:0006400(InterPro)|GO:0016763(InterPro)
Cco11g1480 654 Gene3D - 1 366 IPR036511 GO:0006400(InterPro)|GO:0016763(InterPro)
Cco11g1480 654 Pfam Homeobox associated leucine zipper 500 541 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g1480 654 SUPERFAMILY Homeodomain-like 435 502 IPR009057 -
Cco11g1480 654 ProSiteProfiles 'Homeobox' domain profile. 440 500 IPR001356 GO:0003677(InterPro)
Cco11g1480 654 SUPERFAMILY tRNA-guanine transglycosylase 1 362 IPR036511 GO:0006400(InterPro)|GO:0016763(InterPro)
Cco11g1480 654 Gene3D - 436 505 - -
Cco11g1480 654 Coils Coil 513 540 - -
Cco11g1480 654 SMART HOX_1 443 504 IPR001356 GO:0003677(InterPro)
Cco11g1480 654 Pfam Homeodomain 446 498 IPR001356 GO:0003677(InterPro)
Cco11g1480 654 CDD homeodomain 445 501 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1480 K00777 - - csv:101206917 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0805 Cco-Chr10:16279963 Cco11g1480 Cco-Chr11:27610251 2.20E-32 dispersed
Cco10g1420 Cco-Chr10:27286663 Cco11g1480 Cco-Chr11:27610251 1.10E-24 dispersed
Cco10g1941 Cco-Chr10:32971895 Cco11g1480 Cco-Chr11:27610251 3.90E-15 dispersed
Cco11g1480 Cco-Chr11:27610251 Cco04g1619 Cco-Chr4:31509962 1.30E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005915 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 6 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60287 PF01702 TGT 1.00E-147 No_clan Cco TF