Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1487 ATGGCAATAAGGAAGAAGAATCACGTTCTCACTTGTGAATTATTGTTACTTTTGTTGCCACTGCCGCAGCCGGCAGCCGCGCAGGAAACCGGAGCCGGAACGATACCGATATCGTCGGAACCGGAGGTTAGTAAAAACATGGCGATTGCATTCGTTGCGCTGATTTCTGGCTTCTTCATCCTTGGCATCATCTCTATTTACACGCGCCGCTGCAGAGAGAGGAGGTTCCGAGGTGCAGGAATCGGAATAGGTAGCGGAGGTGGTAGCGGCGGCGTGCCGTGGAGGCCGTCGCGTGGACTTGATCCGGCGTTCATAGCGACATTTCCAACTTTTGTGTACTCGACGGTGAAAGGGCTGAAAATCGGGAAAAGCTCACTGGAATGTGCTGTTTGCTTGAATGAATTCGAAAATAGCGATAGCCTGCGTTTAATTCCGAATTGTAGCCATGTTTTTCACTCTGCTTGTGTTGATGCTTGGTTAGTTTCACACTCGACTTGCCCCGTTTGCAGAGCCAATCTCTGTCCTAAACCTGGTGAAGTAACATTGTCGATCGTTAATTTCGATCCGTCCACCGGCTCAGAAAGAATCGGAGTTGAACGGTCGCCGACGCCATCACCATCACCGCCGAACCACGTGTCGATTCCGATGGTGAATGACTGCCATGCCGGAGAAGGAGCGGCAACGGATATCAATGCGACGAATCCAAGTCCGGTGGCGAACCGGAGTACACCGACGCGGTCGAGGTCGCTGGGATGGCGGTTGAGCGGAATATTTCAGCGGTCTAACTCGACCGGGCATGAGCGGTTTACTCTAAGGTTACCGGAGGCAGTTCGGAGTCAGTTGATGAACTCGACGCTGAACCGGACCAGAAGCTGGGCGGAGTTGCCGAGGGTGCAGAGTTTGCGACGGGGATACCGGGGTGGAATTGGAGAAAATGGCGGGTGGAGGAATTTCCTACGGCGGACGTTTTCGGTTCCGGCGTCTGTAGTCGGAAGGGCTGCCGGAACCGATCCGGTGAATGAGGACTTCGGCGAACGATCGTTTGCGCGGCTGAGGCCAAGTGGAAATGGTCCGAGTACAACGGCGGATTAG 1092 54.12 MAIRKKNHVLTCELLLLLLPLPQPAAAQETGAGTIPISSEPEVSKNMAIAFVALISGFFILGIISIYTRRCRERRFRGAGIGIGSGGGSGGVPWRPSRGLDPAFIATFPTFVYSTVKGLKIGKSSLECAVCLNEFENSDSLRLIPNCSHVFHSACVDAWLVSHSTCPVCRANLCPKPGEVTLSIVNFDPSTGSERIGVERSPTPSPSPPNHVSIPMVNDCHAGEGAATDINATNPSPVANRSTPTRSRSLGWRLSGIFQRSNSTGHERFTLRLPEAVRSQLMNSTLNRTRSWAELPRVQSLRRGYRGGIGENGGWRNFLRRTFSVPASVVGRAAGTDPVNEDFGERSFARLRPSGNGPSTTAD 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27697706 27698797 + CcPI632755_11g014870.1 Cco11g1487 192723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1487 363 CDD RING-H2_EL5-like 127 170 - -
Cco11g1487 363 MobiDBLite consensus disorder prediction 192 211 - -
Cco11g1487 363 FunFam E3 ubiquitin-protein ligase ATL6 92 176 - -
Cco11g1487 363 MobiDBLite consensus disorder prediction 334 363 - -
Cco11g1487 363 Pfam Ring finger domain 127 170 IPR001841 -
Cco11g1487 363 SMART ring_2 128 169 IPR001841 -
Cco11g1487 363 MobiDBLite consensus disorder prediction 226 246 - -
Cco11g1487 363 MobiDBLite consensus disorder prediction 229 246 - -
Cco11g1487 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 39 221 - -
Cco11g1487 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 175 IPR013083 -
Cco11g1487 363 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Cco11g1487 363 SUPERFAMILY RING/U-box 123 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1487 K10664 - - csv:101206673 536.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1288 Cco-Chr8:24672942 Cco11g1487 Cco-Chr11:27697706 1.00E-75 dispersed
Cco09g2195 Cco-Chr9:36276998 Cco11g1487 Cco-Chr11:27697706 2.40E-14 dispersed
Cco10g0643 Cco-Chr10:8887994 Cco11g1487 Cco-Chr11:27697706 7.90E-11 dispersed
Cco11g1306 Cco-Chr11:25687463 Cco11g1487 Cco-Chr11:27697706 2.50E-20 dispersed
Cco02g1720 Cco-Chr2:29906505 Cco11g1487 Cco-Chr11:27697706 8.00E-47 transposed
Cco09g1190 Cco-Chr9:11825328 Cco11g1487 Cco-Chr11:27697706 8.40E-23 transposed
Cco11g1487 Cco-Chr11:27697706 Cco04g1615 Cco-Chr4:31463614 1.40E-24 wgd
Cco11g1487 Cco-Chr11:27697706 Cco08g1286 Cco-Chr8:24634433 1.00E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59