Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1490 ATGCGTCCATTTCTTCGCAATACCCATCTGATGATACGCTTCTTTTCCACACACTCATTCTCTCTCAAATTGAACTCAACACCCATATTTCCTCAATTTTCTCGCTCTCTCCAAATCCCTTTCTTCAAGCTCCCTCACGGTGTTTCTCGGCCGAATTCGAGCTCTGGGATTTGCTGGTTTTGCTCGAAGTCTCGTATTGAAGCTATGCAGGAGGCCATTTCGTATCTGTCGCAGAGGGAAGCAGCTGAGGTCGATGAGATTCTCATGGGCCCTCTTGGATTCAGCGTCGACCAATTGATGGAGCTGGCTGGATTGAGTGTAGCCACTTCAATAGCTGAGGTTTACAAAGCCAGTGAGTATAAACGTGTTCTTGTTATTTGTGGTCCTGGAAACAATGGTGGAGATGGTCTTGTGGCTGCTCGCCATCTGTTTCACTTTGGATACAAGCCATTTATTTGTTATCCAAAGAAGACTCCGAAGCCTCTTTATGCTGGTTTGGTTACTCAGCTGGAATCACTGTCAGTTCCTTTCTTGACAGTGGAGGACTTGCCTTTGGATTTGTCAAAGGATTTTGACATTATAATCGATGCAATTTTTGGGTTCTCCTTCCATGGTGCTCCAAGGCCACCATTCAATGATTTGATCCAAAGGCTTGTATCTTTAAATGAGTACGAGGAATCAAATCAAAGAAGTCCTGTTATTGTTTCTGTAGATATTCCATCTGGATGGCATGTTGAAGAAGGGGATATTAGTGGTAGCAGCTTTAAACCTGATATGTTGGTTTCTCTGACTGCCCCAAAGCTGTGTGCAAAGAAATTTGATGGTCCACATCATTTTTTAGGCGGCAGATTTGTGCCACCATCTATTGTGAACAAATATAACCTTCATCTTCCTCCTTATCCTGGCACTGCAATGTGTGTTCGAATAGGTAAGCCTCCACAAGTTGATATTGCTGCACTTAGAGAAAACTATATTTCTCCAGAATTTGTTGAAGAAAATGTAGAGGCTGATCCTATTCGTCAGTTCCACAAATGGTTTGACGATGCAATTACTGCTAATTTAAGGGAACCTAATGCAATGTCTTTGTCCACAGCTACAAGTGATGGAAAACCATCATCTCGCATGGTTTTGCTAAAAGGAGTTGATGAAGATGGTTTTGTCTGGTACACAAATTATGAAAGTCGGAAAGCACATAACCTAGCTGAAAATCCACGTGCTTCACTTCTTTTCTTCTGGGAAGGTCTCAATAGGCAGGTAAGAGTGGAAGGATCTGTGCAGAAAGTTTCTGAAGAGGAATCTGAGCAGTATTTCCACAGCCGTCCTCGGGGAAGTCAGCTTGGTGCAATAGTTAGCCCACAGAGTTCTGTAGTTCCTGGAAGACATTTTCTCATCGATAAGTACAAGGAACTAAAGGATAGATTTTCGAATGGAAGTTTGATTCCAAAACCAAAACACTGGGGAGGATACAGACTTAAACCAGAACTTTTTGAGTTTTGGCAAGGGCAGCCATCTCGGTTGCATGACAGGTTGCAATATTCCCCTTGCGAGATAGATGGAAAGAAAGCTTGGAAAGTTGAACGGCTTCATTCAGGCTCTTCTGCCCCGGCTTCTAGAAGGGGTCCGGTGCAAAGCACTGCTAAATTGAGTCCCTTCTGGACTTGCTTGATCTTTGCCGTTTACATTGATATTGACGGGCACTGA 1701 43.39 MRPFLRNTHLMIRFFSTHSFSLKLNSTPIFPQFSRSLQIPFFKLPHGVSRPNSSSGICWFCSKSRIEAMQEAISYLSQREAAEVDEILMGPLGFSVDQLMELAGLSVATSIAEVYKASEYKRVLVICGPGNNGGDGLVAARHLFHFGYKPFICYPKKTPKPLYAGLVTQLESLSVPFLTVEDLPLDLSKDFDIIIDAIFGFSFHGAPRPPFNDLIQRLVSLNEYEESNQRSPVIVSVDIPSGWHVEEGDISGSSFKPDMLVSLTAPKLCAKKFDGPHHFLGGRFVPPSIVNKYNLHLPPYPGTAMCVRIGKPPQVDIAALRENYISPEFVEENVEADPIRQFHKWFDDAITANLREPNAMSLSTATSDGKPSSRMVLLKGVDEDGFVWYTNYESRKAHNLAENPRASLLFFWEGLNRQVRVEGSVQKVSEEESEQYFHSRPRGSQLGAIVSPQSSVVPGRHFLIDKYKELKDRFSNGSLIPKPKHWGGYRLKPELFEFWQGQPSRLHDRLQYSPCEIDGKKAWKVERLHSGSSAPASRRGPVQSTAKLSPFWTCLIFAVYIDIDGH 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27720033 27731606 + CcPI632755_11g014900.1 Cco11g1490 192726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1490 566 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 486 528 IPR019576 -
Cco11g1490 566 PANTHER PYRIDOXINE-5-PHOSPHATE OXIDASE 312 529 IPR000659 GO:0004733(InterPro)|GO:0008615(InterPro)|GO:0010181(InterPro)
Cco11g1490 566 Gene3D - 324 520 IPR012349 -
Cco11g1490 566 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 323 530 IPR000659 GO:0004733(InterPro)|GO:0008615(InterPro)|GO:0010181(InterPro)
Cco11g1490 566 Gene3D - 72 314 IPR036652 -
Cco11g1490 566 NCBIfam NAD(P)H-hydrate epimerase 78 274 IPR004443 -
Cco11g1490 566 SUPERFAMILY YjeF N-terminal domain-like 74 304 IPR036652 -
Cco11g1490 566 ProSiteProfiles YjeF N-terminal domain profile. 81 317 IPR004443 -
Cco11g1490 566 Pfam YjeF-related protein N-terminus 97 269 IPR004443 -
Cco11g1490 566 FunFam NAD(P)H-hydrate epimerase 331 535 - -
Cco11g1490 566 FunFam NAD(P)H-hydrate epimerase 73 314 - -
Cco11g1490 566 NCBIfam pyridoxamine 5'-phosphate oxidase 337 529 IPR000659 GO:0004733(InterPro)|GO:0008615(InterPro)|GO:0010181(InterPro)
Cco11g1490 566 SUPERFAMILY FMN-binding split barrel 330 528 - -
Cco11g1490 566 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 496 509 IPR019740 GO:0016638(InterPro)
Cco11g1490 566 Hamap NAD(P)H-hydrate epimerase [nnrE]. 77 312 IPR004443 -
Cco11g1490 566 Pfam Pyridoxamine 5'-phosphate oxidase 346 432 IPR011576 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1490 K23998 - - csv:101207469 959.903
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g476 . . . . Bpe02g00130 Bpe04g00429 . Bma01g02596 . . Cma01g01633 . . . . . . . . . . . . . . . . . . . . Cone4ag1312 Cone7ag1255 . . Lsi04g02266 Csa03g04475 Chy04g00226 . . . Bda11g00785 . . . . . Sed05g1572 Cmo01g01678 . . . . . . . Bhi09g02478 Tan01g3831 . . Hepe01g2157 Mch11g0694 . Cla11g01409 Cam11g1466 Cec11g1494 Cco11g1490 Clacu11g1627 Cmu11g1444 Cre11g1863 . . . Cme04g00252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004922 1 3 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 40