Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1499 ATGCCGAGACGCGTCATGGAAGTTTACGACTCGGTGGTGAATCGGAGAAAGCTTTCTTCTTCATCAGATGACGGAGTTTTGGTTAGTGGCATTGTAGTTGTGAGTCAAGATGGCAAAGGAGACTTCCTCAACATTACCGAAGCTATTAATGCAGCTCCAAATAACGCTCTTGCTGCCAATGGCTACTTCTTGATTTACATTATGGCTGGTGTTTACCAAGAGTATGTGTCTATCCCTTCAAAGAAGAAGTACTTGCTGATGACTGGAGATGGTATAAATCAGACTATCATCACAGGCAACCGGAGCGTTGCGGACGGATGGACGACGTTCAACAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCTTCCAAAACACAGCTGGACCCATCAAGGGCCAAGCACTTGCATTAAGAAGTGGAGCTGATGTGTGTGTTTTTTACAGCTGCAGTTTTGAAGGCTACCAAGACACCTTATACACTCATTCCCTCAGACAATTCTTTAGAGAATGTGATATTTATGGCACAGTGGACTTCATATTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTTCCCCGCCCCGGTCAGACCAACATGATCACTGCTCAAGGCCAATCGGATCCGAACCAAAACACCGGGACTTCGATCCACAACTGCACGATCCGCTCCGCAAGCGATTTGGCTGCAAGTAGTAGCTATATGAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTGTATATGCAAACATTTATAGATGAGTTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGCACATTGTATTATGGAGAGTATAATAATAGAGGAGGAGGATCAAATCCAAAGAACAGAGTTAATTGGTCAGGTTTTCATGTGATTAATAATGCAACAGATGCTGCTCATTTTACAGTTTCAATTTTCTTGGCTGGGGATGTGTGGTTGCCTCCAACATGCGTGCCTTACACTGGAGGCTTGATATAA 1041 43.71 MPRRVMEVYDSVVNRRKLSSSSDDGVLVSGIVVVSQDGKGDFLNITEAINAAPNNALAANGYFLIYIMAGVYQEYVSIPSKKKYLLMTGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGPIKGQALALRSGADVCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQTNMITAQGQSDPNQNTGTSIHNCTIRSASDLAASSSYMNKTYLGRPWKQYSRTVYMQTFIDEFINPGGWDPWSGEYLSTLYYGEYNNRGGGSNPKNRVNWSGFHVINNATDAAHFTVSIFLAGDVWLPPTCVPYTGGLI 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27818807 27820838 - CcPI632755_11g014990.1 Cco11g1499 192735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1499 346 ProSitePatterns Pectinesterase signature 2. 178 187 IPR033131 -
Cco11g1499 346 PANTHER PECTINESTERASE 30 336 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco11g1499 346 Pfam Pectinesterase 32 331 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco11g1499 346 Gene3D - 28 345 IPR012334 -
Cco11g1499 346 FunFam Pectinesterase 27 345 - -
Cco11g1499 346 SUPERFAMILY Pectin lyase-like 28 344 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2268 Cco-Chr9:36944807 Cco11g1499 Cco-Chr11:27818807 2.20E-57 dispersed
Cco10g0571 Cco-Chr10:7365276 Cco11g1499 Cco-Chr11:27818807 1.90E-88 dispersed
Cco11g0021 Cco-Chr11:278329 Cco11g1499 Cco-Chr11:27818807 3.60E-78 dispersed
Cco11g1499 Cco-Chr11:27818807 Cco09g0539 Cco-Chr9:4706801 1.50E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1499 K01051 - csv:101205879 609.757