Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1503 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCTCAGCCCTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCACCGCCGCGTGATTCACCAGCCTCCGCCGATGAGGATTCCGCGGCCGGTCCCTCGCCTCTCGCTCACGCCATGGTTCTCAAAGAACCGACCTCCACCGGCGACGGAGCTTCCATCGAGGTTGTACGCCGCCCCCGCGGCCGCCCGCCGGGATCCAAGAACAAGCCGAAGCCAGCGGCCGTCGTCGTCGCCGGCCGCGAGGCCGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGCAGCGATGTCGTCGAATCGATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCTGACGTCACTCTCCGGCAACCGTCGTCGTCTCCGGTCAGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCAACTTTTGTTCCTCACACGACGTCGTTTCCAATTCCTAACGGATTCACCGTCACGCTAGCCGGACCGCAGGGCCAGATCTTCGGCGGCTTGGTTGCCGGATCTTTAATCGGCGTCGGAACCGTCTATGTTATAGCCGCTTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTTGAAGAAGCTCACTCTCCGATTTCTGGCGGCAAAGATAGCGAAAACACCGCCGCAGCCGCCGCCACAGAGACCTGCGGTTTGCTGCCGATGTACAGCACTCACTCGTCTTCCGACGTAATTTGGACTCCGGCCGCCAGACAACCGCCTCCACCGCACCATCGTCAGTACTAA 870 59.54 MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSPASADEDSAAGPSPLAHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVSTVTFHGRFDILSVCATFVPHTTSFPIPNGFTVTLAGPQGQIFGGLVAGSLIGVGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEAHSPISGGKDSENTAAAAATETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27851611 27852480 - CcPI632755_11g015030.1 Cco11g1503 192739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1503 289 CDD DUF296 99 211 IPR005175 -
Cco11g1503 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 247 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco11g1503 289 MobiDBLite consensus disorder prediction 1 84 - -
Cco11g1503 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cco11g1503 289 FunFam AT-hook motif nuclear-localized protein 98 229 - -
Cco11g1503 289 Gene3D - 98 237 - -
Cco11g1503 289 MobiDBLite consensus disorder prediction 1 16 - -
Cco11g1503 289 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cco11g1503 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0685 Cco-Chr11:7455160 Cco11g1503 Cco-Chr11:27851611 2.80E-32 dispersed
Cco11g1503 Cco-Chr11:27851611 Cco08g1328 Cco-Chr8:25156404 3.80E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1503 - - - 0.0