Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1505 ATGGACCCCAACCAGAACGTCACGAGCATTTTTTTGTGGGAGGTTTGGAATTATTGTAATTTCATTAAAAATGTCGAGTCCTCTCCACTTGTAGGCTCCTTTGCTCCAAGATTTCTCCGTGTTGAGGAACTTAAGATTAGTGTCTCATCTTCCCCTTTATCTGTAGAATCTAATTGCATTAGACTTAACATAACTCTTTTAATGATTTACCCATCACATGTACAGCGCCACCCCCTTCCCCTTTCCCCCAAATCTCTGCTGCTTCATTTCTCGATCTTCATCAGGTTGATTTTAGTTTTTTTAGGTTTGTCAATGGAGAACTTGGATGGAAAATCTTCAGATTCTACGCAATGCGTTCGCGTTGCTGTTAATATCAGACCTTTGATTACACCCGAGCTAATGGTTGGATGCACGGATTGTATTACAGTTGTGCCTGGCGAACCTCAGGTTCAAATTGGCTCACATGTATTCACATACGACAATGTGTATGGTAGTGCTGGATCACCATCTTATGCATTATACGACGATTGCGTTGCTCCACTAGTCGATGCATTATTTCAGGGTTATAACGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACTTACACAATGGGGACAAATTATAGTGGTGAAGGAAGTAATGATGGAGTAATACCCAAAGTAATGGAAAAAATATTCAAAAAGGTCGAGACAAAGAAGGATTCTACCGAATTCTTGATCAGAGTATCATTTATTGAGATATTTAAGGAAGAAGTCTTTGATTTGCTTGATGCAAGTACTTGCCTTAACACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACGGTTAATGGTGGAATTACACTTGTTGGCGTCACCGAGGCAGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGCCAGTCAAGTCGATCACATGCCATATTTACTATTACCATGGAGCAAAAGAAGAAGCTTGGGCGAGGCATGTCTCATGATGATACATGTGACGACATTCTATGTGCTAAGCTCCACTTGGTGGATCTTGCCGGTTCTGAAAGAGCCAAACGAACAGGTGCCGATGGCATGCGCTTTAAAGAAGGCGTTCATATCAACAAGGGCCTTTTGGCACTTGGCAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCATGTTCCCTACCGTGATAGCAAGTTAACACGTTTGCTACAGGATTCTCTTGGTGGCAACAGCAGAACAGTGATGATTGCTTGTGTTAGTCCTGCTGACTCAAATGCAGAGGAGACCTTAAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAAATACAAAAAATGCGAAGTGAAATTGAGCAATTGCAAGCTGAGCTTTTATTCTATCGCGGTGATGCAACTTTACCATATGAGGAGCTGCAGATTCTAAAGCATAAAATATCATTACTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAGCTTCAAGAACGTCGAGTCACTTGCGATCATTTGTCTCAGCGTGCTATTGAGGCTCAGGTTGAAAAAGACAAACTTGCCATGATAATTGAATCCGTGCGGAATGGCAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAATTGGTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTACTGAGGTTGCAAAGCTTTAAGAGTTCAAAACACAGCCGATATGTAGATCTTGTGGAGTCTGATGATGATAGGCCGCAGTCTAGTAACATCTTATTTCCATGTTCAAATGAGCATTCGTCGGAATATGATCCCAAAGCTGTAGATATTTCAGATGGAATGGAAGATCATGAAAAGGAGCTTGAACATTCAACAATGCAAGAACGATTAGACAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGGTTGCTGGTACGGATACCTCTGTTCTAAAACAACATTATGAAAAGAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCGAACATATCTTCTACATCTGATGATGGAGCGCAAAAGTTGAAGCAAGAATATCTGCAGAAACTAAATTTCCTAGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAGGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAAAAGGTTCAACTTCAACACAAGATTAAACAGGAATCCGAGCAATTTAGATTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAGATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACAGAAGAAGCCGCTCAGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAATCTTCCGGTGGGGGATCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCACGAGCTTGAAGTTACAGTTAGGGTGCACGAGGTTCGTTCTGAATACGAACGTCAAATGGAAGAGAGGTCTAAAATGGCCAAGGAATTGGCTAAGCTTAAGGAGGAAGAAGAATTACACAGAGGAGCTAAGTTGAGTGATTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTCGAAAACATGCTCGCTACATCATCCAGCTCTTTGGTTTCCATGGCTTCACATTTGTCGGAGGCAGAAGAGCGTGAGCGCGTTCTTGGTGGTAGGGGACGTTGGCATCAAGTGCGATCTTTAGCCGATGCAAAGAACATTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCTAGAGAGAAGGATTCAGAAATTAGAGAATTGAAACAAAAAATAGTGAATCTTAGTGGCATGCTGAAAAAATCAGAAGCGCAAAAGGCAGAACTTATTCATCAGAACTCGGCTTTGAAAAGATGTTCCCCGGTTAATAGCGGGGGGCATAACTACGATTTACGCAAGCAGGAGCATCGAAATTCTGTCGTCATACCTGCGGACATGGATACATCAGAATCAGATTATGCAGATCTTAGTTCAGATAGCGACGATATTAATTATGATTGGGAGAGATCCATGAAACGACGATTTGATAGGAAAAAAGTCTCTAAAGCTAAGGGTCGTTCAAGTATGGTTGTCTCAGATGGCACAAATAGTACAGAGTTTAACTTGGATAGTTCTGGCGATGGGGTACTTCGTGGGAATGAATCCACTGCTAGCACCATTGTTTGTTGTACTTGTAGCAGATCTTCTTCCTGCAAGACAACAAAGTGCCAGTGTAGAGCGAATGGTGGTGCTTGTGGCTTGTCATGTGGTTGCATACCATCAAAGTGTTCAAACAGAGGTAGTAAAAGTGACCGGGACGCATCATTGCAACTGGATTTAACCAGGAATGTTCGAAATGCTACGGAAAACGATGAAACCGATGAGGAGAGTCATGACCTTGTTTCTCATGGTGCAAGGTTGCTTCAGAATGCCTTGGCTGAGAGACCAAGTGACGACGCTCCTCCAGCTGAAGATGGTGGCGCAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGGTGAAATCAAAGACAAACAAGCCAAACCAGAGAAAGAAATGGCGAAAATCTACCATTCAACTGATTCCAACCCCACAAGCATCTACCCAACCAGAAAAACCCGAAGCCACCCAGAAGACTGAGAATGATTCGAATGAGGTTGTCAACTTCCCGTTGAAACTTCCCCGAGCTATGCGATCCGCTGCTGCGAACGGCGGGAACCTACTGAGAGAAAGAAACTCCGATCAGCCAGAAGATTCGATCAGCGGAAACAAAGAGCATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAATTGCAACCGTTAA 4140 42.34 MDPNQNVTSIFLWEVWNYCNFIKNVESSPLVGSFAPRFLRVEELKISVSSSPLSVESNCIRLNITLLMIYPSHVQRHPLPLSPKSLLLHFSIFIRLILVFLGLSMENLDGKSSDSTQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPSYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSNDGVIPKVMEKIFKKVETKKDSTEFLIRVSFIEIFKEEVFDLLDASTCLNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGRGMSHDDTCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSEIEQLQAELLFYRGDATLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIEAQVEKDKLAMIIESVRNGKSLDEIESNYDKDCELVKSYVSKIQELEGEVLRLQSFKSSKHSRYVDLVESDDDRPQSSNILFPCSNEHSSEYDPKAVDISDGMEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRVAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARESSGGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEEELHRGAKLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERVLGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSALKRCSPVNSGGHNYDLRKQEHRNSVVIPADMDTSESDYADLSSDSDDINYDWERSMKRRFDRKKVSKAKGRSSMVVSDGTNSTEFNLDSSGDGVLRGNESTASTIVCCTCSRSSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSDRDASLQLDLTRNVRNATENDETDEESHDLVSHGARLLQNALAERPSDDAPPAEDGGAKRKPLSDIGNTLVKSKTNKPNQRKKWRKSTIQLIPTPQASTQPEKPEATQKTENDSNEVVNFPLKLPRAMRSAAANGGNLLRERNSDQPEDSISGNKEHELIVPKRVDEKENCNR 1379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27867288 27881810 + CcPI632755_11g015050.1 Cco11g1505 192741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1505 1379 Coils Coil 659 690 - -
Cco11g1505 1379 Coils Coil 696 730 - -
Cco11g1505 1379 Coils Coil 898 925 - -
Cco11g1505 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 501 IPR027417 -
Cco11g1505 1379 Coils Coil 739 804 - -
Cco11g1505 1379 MobiDBLite consensus disorder prediction 1250 1379 - -
Cco11g1505 1379 MobiDBLite consensus disorder prediction 616 640 - -
Cco11g1505 1379 Pfam Kinesin motor domain 151 468 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 Gene3D Kinesin motor domain 113 502 IPR036961 -
Cco11g1505 1379 FunFam kinesin-like protein KIN-4A isoform X1 111 496 - -
Cco11g1505 1379 MobiDBLite consensus disorder prediction 1348 1379 - -
Cco11g1505 1379 ProSiteProfiles Kinesin motor domain profile. 118 468 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 Coils Coil 483 503 - -
Cco11g1505 1379 CDD KISc_KIF4 118 469 - -
Cco11g1505 1379 PRINTS Kinesin heavy chain signature 324 341 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 PRINTS Kinesin heavy chain signature 418 439 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 PRINTS Kinesin heavy chain signature 364 382 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 PRINTS Kinesin heavy chain signature 188 209 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 Coils Coil 1028 1048 - -
Cco11g1505 1379 MobiDBLite consensus disorder prediction 1200 1237 - -
Cco11g1505 1379 Coils Coil 844 871 - -
Cco11g1505 1379 MobiDBLite consensus disorder prediction 1291 1323 - -
Cco11g1505 1379 SMART kinesin_4 116 476 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco11g1505 1379 SMART CXC_2 1161 1205 IPR033467 -
Cco11g1505 1379 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 113 1354 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Cco11g1505 1379 ProSitePatterns Kinesin motor domain signature. 363 374 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco11g1505 1379 MobiDBLite consensus disorder prediction 1221 1237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1505 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1871 Cco-Chr10:32307492 Cco11g1505 Cco-Chr11:27867288 9.60E-63 dispersed
Cco10g2098 Cco-Chr10:34308462 Cco11g1505 Cco-Chr11:27867288 3.60E-44 dispersed
Cco11g0411 Cco-Chr11:4253588 Cco11g1505 Cco-Chr11:27867288 9.30E-56 dispersed
Cco05g2277 Cco-Chr5:31485994 Cco11g1505 Cco-Chr11:27867288 6.30E-259 transposed
Cco11g1505 Cco-Chr11:27867288 Cco04g1601 Cco-Chr4:31346683 4.70E-28 wgd
Cco11g1505 Cco-Chr11:27867288 Cco08g1321 Cco-Chr8:25066795 4.70E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32