Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g1511 | ATGCACGGACGGCCGCGCAAGCCTCAGAAGCCGGAGGAAGAAGAAGCTTCGGCGGTGGAAGCCGCAAAGCTTCGGAATCTGCAATCTCAATTGCTCGCAAATCACCACCAAAAGAACTATGCAAAGGAAGCTCTAGAGGTCAGTGCTAATTTGCTGGAAATGAATCCGGATCTGTATACGGCTTGGAACTATAGGAAACTTGCGGTTGAACACTACTTGAAGGAATCTCCATCAGACATAGAGTCGATCAAAGCGATTCTCGACGAGGAACTTAGAGTAGCTGAAAGTGCATTGCGTCAGAACGTCAAGTCGTACGGCGCGTGGTATCATCGAAAATGGATTTTGAGCAAGCGGCATTCCTCCACCGATCATGAGTTGCGACTGCTTGGAAAGTTTCAGAAACTCGACGCTAGGAATTTTCATGCCTGGAACTACAGAAGATTTGTGGCAGGGCTAATGAACATACCAGAGGAGAAAGAATTGAAGTATACAACAGATATGATAGATACAAATTTCAGCAATTATTCAGCATGGCATAATCGCAGTGCGCTTCTTGCCAAATTGCTGAACAAAAAGGCTGAAGGGTATTTCCCAGTGGAAAAGGTGTTAAATGATGAGTATGAGCTTGTGCACCAAGCTATTTTCACTGATCCGGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGACCAAACGGTGAAAACAAATCCTCCGAGTCTTGTTTCTTCTTGGCCACCTCATAGTTTTAATGTGGCATTATCAAGAACTGGATGTCTGAATGATCGCACTCTCTCTTCATTTAGTCGTTTCCAATCAGATTCAGGAACAATACCCCTCATTCTTTACTTTGATCAACCTGTTCAAGGACTTGACGCATCTTCAGTTATTGTTAAATCTACAGCTAATTTAAGAGATCTTATTTGGAAACCACTCTCAAAATGTAACCGTGCTGCCGCCAAAGCTTGGGTTAGTCATCTGAATTTTCCTCAAGAAGAGCTCAATTCTTATTCGGTGGAAGTCAGCATAGGACATTCTCAGAAATTAGTATCTGCAACTGGTTTTCATCATGTGAAACCAACTCATTTTTCTTTTAAAGTGGCTGTGAATTTAGGAGAAACAACCACTGAAGATTGTGGTAACGGAGGGATTAGGTGGAAGGACGAAAACTTTACTAGTTGTGGAATTAGTCAGAATTTTCCATTTGGTTCTTCCGGCAATCCAACCGGTGAGGATAATTATGCACCTTCTACTTCTGAGTGGTGTGCTGAGACTATAAGTAATGAAATAGCTCTGTTCCGAGAATTATTGTCAGAGACCGATTGTAAAATTGGAAAGCTCACTCTTGCTAGATTGTTGATGGCTCATGCAGCAACATCTCCACATGCCAATAAAATTGTCCAACTTGAGGAAGTTCTGGACCTTTACCAAGACCTGATGAAGTTGGACCCATCACATTTTTATTACTACGAGGATGAACACAGCTTAGTTTTATTGAAGAAGCTGACATCTACTAGGGAGTCCTTGTTAAGACACTGCTATTCCTACAAAGACAAGACGTCCCCATATATTGATAGTACTACCTGTCTACGGCTCAATAATTTATCAATTTCACGGATTGAATCTGTAGAAAAACTACTGTGGGTGCAAGTGCTGGACCTCAGCCACAATGAAATTCGATCAATTGAAGGATTGGAGGGCATGCAGCTCCTCTCTTGCTTGAGTTTGAGTAACAATAAAATCGGCAGTTTTACTACGTTGGAGCCTCTGAGACTGATAAAGTCTTTAAAAGTTTTGGATATTTCATACAACGAGATAGGGTTGCATTCTATCGACACAACCAGATATCTCTTCTCATCTCCCCTGTCTCACTCTGAAGAAAATTATTTAAGCGGTGATGAATTGGCAATTGATTGTACCGATCTGGCAACTTACTGGGAAGCTTATCTTCTATTCAAAGATCTAAGCTTGGCGCAATTGGATATCGAAGGAAACATGATATCTAGTGAAAGGTCAAGAACCAAGGATCGGATAATGCATCCAATAGACATTGACACTCAACCAAACAAGGCATGGATTCGTACTAAATTTTGTACCAAAATTTTGAAGGATTGTAGTTTTAATGATCTACATGAAGTTCGAGATTTGTGTAGCAAAGCAGGCAGTAAAAGAAACCAATGGAGGAATCTGAAAATCTTGGAAGCGGAATTGCGAAGCCAGGGAAAAAAGGGACCGGAAGCACGTGAGGATGGACCATAG | 2262 | 41.56 | MHGRPRKPQKPEEEEASAVEAAKLRNLQSQLLANHHQKNYAKEALEVSANLLEMNPDLYTAWNYRKLAVEHYLKESPSDIESIKAILDEELRVAESALRQNVKSYGAWYHRKWILSKRHSSTDHELRLLGKFQKLDARNFHAWNYRRFVAGLMNIPEEKELKYTTDMIDTNFSNYSAWHNRSALLAKLLNKKAEGYFPVEKVLNDEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPSLVSSWPPHSFNVALSRTGCLNDRTLSSFSRFQSDSGTIPLILYFDQPVQGLDASSVIVKSTANLRDLIWKPLSKCNRAAAKAWVSHLNFPQEELNSYSVEVSIGHSQKLVSATGFHHVKPTHFSFKVAVNLGETTTEDCGNGGIRWKDENFTSCGISQNFPFGSSGNPTGEDNYAPSTSEWCAETISNEIALFRELLSETDCKIGKLTLARLLMAHAATSPHANKIVQLEEVLDLYQDLMKLDPSHFYYYEDEHSLVLLKKLTSTRESLLRHCYSYKDKTSPYIDSTTCLRLNNLSISRIESVEKLLWVQVLDLSHNEIRSIEGLEGMQLLSCLSLSNNKIGSFTTLEPLRLIKSLKVLDISYNEIGLHSIDTTRYLFSSPLSHSEENYLSGDELAIDCTDLATYWEAYLLFKDLSLAQLDIEGNMISSERSRTKDRIMHPIDIDTQPNKAWIRTKFCTKILKDCSFNDLHEVRDLCSKAGSKRNQWRNLKILEAELRSQGKKGPEAREDGP | 753 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 27930526 | 27935788 | + | CcPI632755_11g015110.1 | Cco11g1511 | 192747 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g1511 | 753 | SMART | LRR_sd22_2 | 547 | 568 | - | - | |
| Cco11g1511 | 753 | SMART | LRR_sd22_2 | 594 | 611 | - | - | |
| Cco11g1511 | 753 | ProSiteProfiles | Leucine-rich repeat profile. | 571 | 592 | IPR001611 | GO:0005515(InterPro) | |
| Cco11g1511 | 753 | FunFam | Geranylgeranyl transferase type-2 subunit alpha | 1 | 242 | - | - | |
| Cco11g1511 | 753 | Pfam | Leucine Rich repeats (2 copies) | 550 | 589 | IPR025875 | - | |
| Cco11g1511 | 753 | ProSiteProfiles | Protein prenyltransferases alpha subunit repeat profile. | 156 | 190 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | ProSiteProfiles | Leucine-rich repeat profile. | 549 | 570 | IPR001611 | GO:0005515(InterPro) | |
| Cco11g1511 | 753 | ProSiteProfiles | Protein prenyltransferases alpha subunit repeat profile. | 202 | 236 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | Gene3D | Protein prenylyltransferase | 1 | 246 | - | - | |
| Cco11g1511 | 753 | Pfam | Protein prenyltransferase alpha subunit repeat | 42 | 71 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | Pfam | Protein prenyltransferase alpha subunit repeat | 158 | 187 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | Pfam | Protein prenyltransferase alpha subunit repeat | 203 | 233 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | Pfam | Protein prenyltransferase alpha subunit repeat | 87 | 117 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | Pfam | Protein prenyltransferase alpha subunit repeat | 123 | 150 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | SUPERFAMILY | Protein prenylyltransferase | 2 | 495 | - | - | |
| Cco11g1511 | 753 | ProSiteProfiles | Protein prenyltransferases alpha subunit repeat profile. | 121 | 155 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | SUPERFAMILY | L domain-like | 500 | 608 | - | - | |
| Cco11g1511 | 753 | Gene3D | Ribonuclease Inhibitor | 463 | 691 | IPR032675 | - | |
| Cco11g1511 | 753 | ProSiteProfiles | Protein prenyltransferases alpha subunit repeat profile. | 86 | 120 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | ProSiteProfiles | Protein prenyltransferases alpha subunit repeat profile. | 40 | 74 | IPR002088 | GO:0008318(InterPro)|GO:0018342(InterPro) | |
| Cco11g1511 | 753 | PANTHER | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT | 1 | 502 | - | GO:0004663(PANTHER)|GO:0005737(PANTHER)|GO:0005968(PANTHER)|GO:0018344(PANTHER) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g1511 | K14050 | - | - | csv:101216457 | 1159.44 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g527 | . | Blo12g00733 | . | . | . | . | . | . | . | . | Cma01g01475 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cmo01g01530 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla11g01428 | Cam11g1484 | Cec11g1516 | Cco11g1511 | Clacu11g1647 | Cmu11g1464 | Cre11g1882 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0005438 | 1 | 5 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 37 |