Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1512 | ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCACAGCAACAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGATCGGCATCAGCTCACGTGAAAACTTGGCTTTCCAACTGCGACGAGGACCGCGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGAGCATGATACATCGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGAGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAGGATTCATCGGCGTCAAAGATATTATCCTCGCACCCGGCGAGGCCGGAAGAGATTGAGGCTGTAGATGGTAAGGAAAGCATAGCACAGAGAGCGAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCATCGCTTCGTTCCCATGCTAGTCTGGCTGGCGATCCTGTGCTCATGGAGGAATGCAGGATGGAAATTACGGACGCTGAAACTGTTTCCTATCGACTTTGGGTAAGTGGTTGCCTGTCCTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACATGGGGACTCTCGACTGAAAGAGCTTGAAGACAAGGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTGCACCTACATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTCCAGAAATGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATCCTTTTCAAGAAATTGGCAGATTACATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCGTCAATGCCTTCACCGCTCCACATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGTTATCTCAATCATCAAACTGTTGGGTCAAAGCAAATCTGTGGATTTCCTGAAAATCCTCTACGTTCAGGTTATGGAGAGTACCAGATGAAAGGGGGAAGCACTTTACATAGGAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCAACTCAGTTGTGTGTGGAGACAAAATTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACTGGTGCTGATGCCTCGGAGGTGTTGAGTTCTGTTGGCAGTGAATCTTTACGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCAGTTGTGGCGGGGATTTCACCGAATGAAACTAGCATTAACCCATCCAAATTAAGCTTGTCAACTCAAACTGCCTCGAAGGTGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACATATCCGAAATATCTGACGCTTGAACCGTCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAACTACATATAAAGGAGCGTGTCGGAGCTGGCTCCTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCATGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCAATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTCTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCCAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTAGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCTAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCGGAATTCCTTCGTGGAGAGCCCTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTCGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCTATCCCACCAAGTACTTCTCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTCACAAGCATCGTCGAGTCCCTAAAGAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGTGGAACTTCCAAAATTACTAGGAACGTATTTTTACTCCTAACCGCACTGTTCCACTACCAGGCCTGTAATCTGTATGAACCCACCGAAGAATGCTCTCTTCTCTCAAGTGAACTTGTCCCTGCCAAGCAATTTTATGATTGGCAAATCAACAACCTGGATCTGCCTCCTTTCTTTGAAAACTGGAGCAAAGAATCTGCGTCGATGACTTTAGCGGAAGAACTGATGAGGTCTTACGAACGTCAAGAGTCTCCGTTCCAACTTGGGCTATTTGATTCTCCTTCAGTTGCAGGTCTTCTAGCATCCTGTGTGTTAGATTTAGATGTGTCTCCTCACGATGTGAAATACTGTAAGGAAAAACTATCGCTTTTCCATAGAAAGAACTAG | 3153 | 46.37 | MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAHSNKKLPAFYDWLVDKKATRSASAHVKTWLSNCDEDRELLLPPPTSEPEHDTSSVKDRSVDRNFDRQVSLPRVSSESSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHPARPEEIEAVDGKESIAQRAKESYYLQLALAASLRSHASLAGDPVLMEECRMEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLRTIEPSETSMEVILVDRHGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESYLNHQTVGSKQICGFPENPLRSGYGEYQMKGGSTLHRSSGAETDKLVDQACMGMRSTQLCVETKLSKECVLQSHIMPSTGADASEVLSSVGSESLRENKVVIEEIYQEEAVVAGISPNETSINPSKLSLSTQTASKVVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTMQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPPSTSPLLASLIESCWADDPVQRPSFTSIVESLKKLLKSPQQLIAMGGTSKITRNVFLLLTALFHYQACNLYEPTEECSLLSSELVPAKQFYDWQINNLDLPPFFENWSKESASMTLAEELMRSYERQESPFQLGLFDSPSVAGLLASCVLDLDVSPHDVKYCKEKLSLFHRKN | 1050 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27937166 | 27946429 | - | CcPI632755_11g015120.1 | Cco11g1512 | 192748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1512 | 1050 | MobiDBLite | consensus disorder prediction | 109 | 138 | - | - | |
Cco11g1512 | 1050 | Pfam | Protein tyrosine and serine/threonine kinase | 655 | 909 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | CDD | STKc_MAP3K-like | 661 | 909 | - | - | |
Cco11g1512 | 1050 | MobiDBLite | consensus disorder prediction | 29 | 57 | - | - | |
Cco11g1512 | 1050 | Gene3D | Transferase(Phosphotransferase) domain 1 | 734 | 921 | - | - | |
Cco11g1512 | 1050 | ProSitePatterns | Protein kinases ATP-binding region signature. | 661 | 682 | IPR017441 | GO:0005524(InterPro) | |
Cco11g1512 | 1050 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 223 | 913 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco11g1512 | 1050 | FunFam | Serine/threonine-protein kinase CTR1 | 734 | 919 | - | - | |
Cco11g1512 | 1050 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 776 | 788 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | MobiDBLite | consensus disorder prediction | 109 | 137 | - | - | |
Cco11g1512 | 1050 | ProSiteProfiles | Protein kinase domain profile. | 655 | 913 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | SUPERFAMILY | Protein kinase-like (PK-like) | 629 | 908 | IPR011009 | - | |
Cco11g1512 | 1050 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 241 | 449 | - | - | |
Cco11g1512 | 1050 | Gene3D | Phosphorylase Kinase; domain 1 | 648 | 732 | - | - | |
Cco11g1512 | 1050 | PRINTS | Tyrosine kinase catalytic domain signature | 729 | 742 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | PRINTS | Tyrosine kinase catalytic domain signature | 836 | 858 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | PRINTS | Tyrosine kinase catalytic domain signature | 770 | 788 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | PRINTS | Tyrosine kinase catalytic domain signature | 880 | 902 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g1512 | 1050 | FunFam | Serine/threonine-protein kinase isoform 1 | 645 | 733 | - | - | |
Cco11g1512 | 1050 | SMART | serkin_6 | 655 | 913 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0422 | Cco-Chr3:4527491 | Cco11g1512 | Cco-Chr11:27937166 | 4.90E-49 | dispersed | |
Cco04g1190 | Cco-Chr4:27334546 | Cco11g1512 | Cco-Chr11:27937166 | 8.20E-173 | dispersed | |
Cco09g1497 | Cco-Chr9:20461374 | Cco11g1512 | Cco-Chr11:27937166 | 1.80E-40 | dispersed | |
Cco11g1147 | Cco-Chr11:22402226 | Cco11g1512 | Cco-Chr11:27937166 | 3.80E-42 | dispersed | |
Cco11g1297 | Cco-Chr11:25531318 | Cco11g1512 | Cco-Chr11:27937166 | 8.70E-48 | dispersed | |
Cco11g1512 | Cco-Chr11:27937166 | Cco08g1529 | Cco-Chr8:26947146 | 2.00E-34 | dispersed | |
Cco11g1512 | Cco-Chr11:27937166 | Cco10g1925 | Cco-Chr10:32842805 | 7.40E-175 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87253 | PF07714 | PK_Tyr_Ser-Thr | 5.40E-64 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1512 | - | - | - | 0.0 |