Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1512 ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCACAGCAACAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGATCGGCATCAGCTCACGTGAAAACTTGGCTTTCCAACTGCGACGAGGACCGCGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGAGCATGATACATCGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGAGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAGGATTCATCGGCGTCAAAGATATTATCCTCGCACCCGGCGAGGCCGGAAGAGATTGAGGCTGTAGATGGTAAGGAAAGCATAGCACAGAGAGCGAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCATCGCTTCGTTCCCATGCTAGTCTGGCTGGCGATCCTGTGCTCATGGAGGAATGCAGGATGGAAATTACGGACGCTGAAACTGTTTCCTATCGACTTTGGGTAAGTGGTTGCCTGTCCTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACATGGGGACTCTCGACTGAAAGAGCTTGAAGACAAGGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTGCACCTACATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTCCAGAAATGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATCCTTTTCAAGAAATTGGCAGATTACATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCGTCAATGCCTTCACCGCTCCACATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGTTATCTCAATCATCAAACTGTTGGGTCAAAGCAAATCTGTGGATTTCCTGAAAATCCTCTACGTTCAGGTTATGGAGAGTACCAGATGAAAGGGGGAAGCACTTTACATAGGAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCAACTCAGTTGTGTGTGGAGACAAAATTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACTGGTGCTGATGCCTCGGAGGTGTTGAGTTCTGTTGGCAGTGAATCTTTACGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCAGTTGTGGCGGGGATTTCACCGAATGAAACTAGCATTAACCCATCCAAATTAAGCTTGTCAACTCAAACTGCCTCGAAGGTGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACATATCCGAAATATCTGACGCTTGAACCGTCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAACTACATATAAAGGAGCGTGTCGGAGCTGGCTCCTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCATGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCAATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTCTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCCAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTAGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCTAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCGGAATTCCTTCGTGGAGAGCCCTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTCGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCTATCCCACCAAGTACTTCTCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTCACAAGCATCGTCGAGTCCCTAAAGAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGTGGAACTTCCAAAATTACTAGGAACGTATTTTTACTCCTAACCGCACTGTTCCACTACCAGGCCTGTAATCTGTATGAACCCACCGAAGAATGCTCTCTTCTCTCAAGTGAACTTGTCCCTGCCAAGCAATTTTATGATTGGCAAATCAACAACCTGGATCTGCCTCCTTTCTTTGAAAACTGGAGCAAAGAATCTGCGTCGATGACTTTAGCGGAAGAACTGATGAGGTCTTACGAACGTCAAGAGTCTCCGTTCCAACTTGGGCTATTTGATTCTCCTTCAGTTGCAGGTCTTCTAGCATCCTGTGTGTTAGATTTAGATGTGTCTCCTCACGATGTGAAATACTGTAAGGAAAAACTATCGCTTTTCCATAGAAAGAACTAG 3153 46.37 MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAHSNKKLPAFYDWLVDKKATRSASAHVKTWLSNCDEDRELLLPPPTSEPEHDTSSVKDRSVDRNFDRQVSLPRVSSESSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHPARPEEIEAVDGKESIAQRAKESYYLQLALAASLRSHASLAGDPVLMEECRMEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLRTIEPSETSMEVILVDRHGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESYLNHQTVGSKQICGFPENPLRSGYGEYQMKGGSTLHRSSGAETDKLVDQACMGMRSTQLCVETKLSKECVLQSHIMPSTGADASEVLSSVGSESLRENKVVIEEIYQEEAVVAGISPNETSINPSKLSLSTQTASKVVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTMQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPPSTSPLLASLIESCWADDPVQRPSFTSIVESLKKLLKSPQQLIAMGGTSKITRNVFLLLTALFHYQACNLYEPTEECSLLSSELVPAKQFYDWQINNLDLPPFFENWSKESASMTLAEELMRSYERQESPFQLGLFDSPSVAGLLASCVLDLDVSPHDVKYCKEKLSLFHRKN 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27937166 27946429 - CcPI632755_11g015120.1 Cco11g1512 192748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1512 1050 MobiDBLite consensus disorder prediction 109 138 - -
Cco11g1512 1050 Pfam Protein tyrosine and serine/threonine kinase 655 909 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 CDD STKc_MAP3K-like 661 909 - -
Cco11g1512 1050 MobiDBLite consensus disorder prediction 29 57 - -
Cco11g1512 1050 Gene3D Transferase(Phosphotransferase) domain 1 734 921 - -
Cco11g1512 1050 ProSitePatterns Protein kinases ATP-binding region signature. 661 682 IPR017441 GO:0005524(InterPro)
Cco11g1512 1050 PANTHER SERINE-THREONINE PROTEIN KINASE 223 913 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco11g1512 1050 FunFam Serine/threonine-protein kinase CTR1 734 919 - -
Cco11g1512 1050 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 MobiDBLite consensus disorder prediction 109 137 - -
Cco11g1512 1050 ProSiteProfiles Protein kinase domain profile. 655 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 SUPERFAMILY Protein kinase-like (PK-like) 629 908 IPR011009 -
Cco11g1512 1050 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Cco11g1512 1050 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Cco11g1512 1050 PRINTS Tyrosine kinase catalytic domain signature 729 742 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 PRINTS Tyrosine kinase catalytic domain signature 836 858 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 PRINTS Tyrosine kinase catalytic domain signature 770 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 PRINTS Tyrosine kinase catalytic domain signature 880 902 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1512 1050 FunFam Serine/threonine-protein kinase isoform 1 645 733 - -
Cco11g1512 1050 SMART serkin_6 655 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0422 Cco-Chr3:4527491 Cco11g1512 Cco-Chr11:27937166 4.90E-49 dispersed
Cco04g1190 Cco-Chr4:27334546 Cco11g1512 Cco-Chr11:27937166 8.20E-173 dispersed
Cco09g1497 Cco-Chr9:20461374 Cco11g1512 Cco-Chr11:27937166 1.80E-40 dispersed
Cco11g1147 Cco-Chr11:22402226 Cco11g1512 Cco-Chr11:27937166 3.80E-42 dispersed
Cco11g1297 Cco-Chr11:25531318 Cco11g1512 Cco-Chr11:27937166 8.70E-48 dispersed
Cco11g1512 Cco-Chr11:27937166 Cco08g1529 Cco-Chr8:26947146 2.00E-34 dispersed
Cco11g1512 Cco-Chr11:27937166 Cco10g1925 Cco-Chr10:32842805 7.40E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87253 PF07714 PK_Tyr_Ser-Thr 5.40E-64 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1512 - - - 0.0