Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1522 ATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTAAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCATGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGTCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAATCTCAGATGACGAAGGAAATTCAAAGCTGGCCCTATTCTTTTCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGTGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTCTCTGCAGGTAGCGATATGGACATAGGTGATCTTGTTTATGAGCCGCCTAGGAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTACGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACACTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCACTGCCAATGTTGCCGAATTACAGATACAGGTAAATAATCCAGAAGCCAAGCCTAGTTTATTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGAATTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGAGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA 1920 42.71 MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSLKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKSQMTKEIQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALATANVAELQIQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRIYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28070757 28076498 - CcPI632755_11g015220.1 Cco11g1522 192758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1522 639 CDD RGL4_C 441 629 - -
Cco11g1522 639 Gene3D - 7 271 IPR014718 GO:0030246(InterPro)
Cco11g1522 639 Pfam Polysaccharide lyase family 4, domain II 354 424 IPR029413 -
Cco11g1522 639 Gene3D - 437 629 - -
Cco11g1522 639 CDD RGL4_N 14 300 - -
Cco11g1522 639 SUPERFAMILY Starch-binding domain-like 327 426 IPR013784 GO:0030246(InterPro)
Cco11g1522 639 CDD RGL4_M 330 429 IPR029413 -
Cco11g1522 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 632 IPR051850 -
Cco11g1522 639 Pfam Rhamnogalacturonate lyase family 3 199 IPR010325 -
Cco11g1522 639 Gene3D - 327 426 - -
Cco11g1522 639 FunFam Rhamnogalacturonate lyase B 327 426 - -
Cco11g1522 639 SUPERFAMILY Galactose mutarotase-like 13 290 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cco11g1522 639 Pfam Polysaccharide lyase family 4, domain III 439 628 IPR029411 -
Cco11g1522 639 SUPERFAMILY Galactose-binding domain-like 436 629 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g1522 Cco-Chr11:28070757 Cco11g1524 Cco-Chr11:28093468 2.30E-272 dispersed
Cco11g1522 Cco-Chr11:28070757 Cco11g1523 Cco-Chr11:28077628 6.10E-265 tandem
Cco11g1522 Cco-Chr11:28070757 Cco04g1583 Cco-Chr4:31210125 2.50E-210 wgd
Cco11g1522 Cco-Chr11:28070757 Cco08g1308 Cco-Chr8:24900713 3.60E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1522 K18195 - csv:101204193 1259.59