Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1522 | ATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTAAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCATGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGTCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAATCTCAGATGACGAAGGAAATTCAAAGCTGGCCCTATTCTTTTCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGTGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTCTCTGCAGGTAGCGATATGGACATAGGTGATCTTGTTTATGAGCCGCCTAGGAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTACGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACACTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCACTGCCAATGTTGCCGAATTACAGATACAGGTAAATAATCCAGAAGCCAAGCCTAGTTTATTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGAATTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGAGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA | 1920 | 42.71 | MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSLKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKSQMTKEIQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALATANVAELQIQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRIYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28070757 | 28076498 | - | CcPI632755_11g015220.1 | Cco11g1522 | 192758 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1522 | 639 | CDD | RGL4_C | 441 | 629 | - | - | |
Cco11g1522 | 639 | Gene3D | - | 7 | 271 | IPR014718 | GO:0030246(InterPro) | |
Cco11g1522 | 639 | Pfam | Polysaccharide lyase family 4, domain II | 354 | 424 | IPR029413 | - | |
Cco11g1522 | 639 | Gene3D | - | 437 | 629 | - | - | |
Cco11g1522 | 639 | CDD | RGL4_N | 14 | 300 | - | - | |
Cco11g1522 | 639 | SUPERFAMILY | Starch-binding domain-like | 327 | 426 | IPR013784 | GO:0030246(InterPro) | |
Cco11g1522 | 639 | CDD | RGL4_M | 330 | 429 | IPR029413 | - | |
Cco11g1522 | 639 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 2 | 632 | IPR051850 | - | |
Cco11g1522 | 639 | Pfam | Rhamnogalacturonate lyase family | 3 | 199 | IPR010325 | - | |
Cco11g1522 | 639 | Gene3D | - | 327 | 426 | - | - | |
Cco11g1522 | 639 | FunFam | Rhamnogalacturonate lyase B | 327 | 426 | - | - | |
Cco11g1522 | 639 | SUPERFAMILY | Galactose mutarotase-like | 13 | 290 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cco11g1522 | 639 | Pfam | Polysaccharide lyase family 4, domain III | 439 | 628 | IPR029411 | - | |
Cco11g1522 | 639 | SUPERFAMILY | Galactose-binding domain-like | 436 | 629 | IPR008979 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco11g1522 | Cco-Chr11:28070757 | Cco11g1524 | Cco-Chr11:28093468 | 2.30E-272 | dispersed | |
Cco11g1522 | Cco-Chr11:28070757 | Cco11g1523 | Cco-Chr11:28077628 | 6.10E-265 | tandem | |
Cco11g1522 | Cco-Chr11:28070757 | Cco04g1583 | Cco-Chr4:31210125 | 2.50E-210 | wgd | |
Cco11g1522 | Cco-Chr11:28070757 | Cco08g1308 | Cco-Chr8:24900713 | 3.60E-265 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1522 | K18195 | - | csv:101204193 | 1259.59 |