Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1523 | ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTTTCTTTTACTTTTACGCGCCCTCCATTTCTGCAACAACAACAATACCACCTCCTCGCCAGTTTTCTTCTTCATGGCCGCCGAACGCTGCCTCGCCGGCCGCCGCCGCACCTCCTCCGCTGCAACTACGGATTCACGACCAACATGTTGTGATGGACAATGGCATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAATACAAAGGGATTGAAAACTTGCTTGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGAGCTCATTCCCTTGAATATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGGGTTCACGGGTGGACATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCCTGCTTCTGAGGATTTTCTCAAATCCAATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCCACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGGTACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAATTAAGTTCCAACTTGACAGTCCGGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCGGGCAGTGAGCTTGTGGTGGGCAACAATACAATTCTTCTTACACAAGCAAGTAGCAACAGTCCTTTTGTAGGGATCATGTATGATTATATTCGTCTAGAAGGACCCTTAACATCCAAAATGTAA | 2076 | 44.89 | MKNSKFFPSILFCLFSSFFFYFYAPSISATTTIPPPRQFSSSWPPNAASPAAAAPPPLQLRIHDQHVVMDNGIIGVNLSNPMGMVIGIQYKGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRELIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLLDPIEPEFKGEVDDKYQYGCESKDARVHGWTSTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFPASEDFLKSNQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALPPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVVGNNTILLTQASSNSPFVGIMYDYIRLEGPLTSKM | 691 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28077628 | 28087022 | - | CcPI632755_11g015230.1 | Cco11g1523 | 192759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1523 | 691 | Pfam | Polysaccharide lyase family 4, domain III | 495 | 683 | IPR029411 | - | |
Cco11g1523 | 691 | Pfam | Polysaccharide lyase family 4, domain II | 409 | 481 | IPR029413 | - | |
Cco11g1523 | 691 | Gene3D | - | 493 | 684 | - | - | |
Cco11g1523 | 691 | Gene3D | - | 383 | 483 | - | - | |
Cco11g1523 | 691 | FunFam | Rhamnogalacturonate lyase B | 383 | 482 | - | - | |
Cco11g1523 | 691 | SUPERFAMILY | Galactose-binding domain-like | 492 | 684 | IPR008979 | - | |
Cco11g1523 | 691 | SUPERFAMILY | Galactose mutarotase-like | 67 | 346 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cco11g1523 | 691 | CDD | RGL4_N | 60 | 346 | - | - | |
Cco11g1523 | 691 | SUPERFAMILY | Starch-binding domain-like | 383 | 483 | IPR013784 | GO:0030246(InterPro) | |
Cco11g1523 | 691 | CDD | RGL4_C | 497 | 684 | - | - | |
Cco11g1523 | 691 | CDD | RGL4_M | 386 | 485 | IPR029413 | - | |
Cco11g1523 | 691 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 52 | 686 | IPR051850 | - | |
Cco11g1523 | 691 | Pfam | Rhamnogalacturonate lyase family | 51 | 255 | IPR010325 | - | |
Cco11g1523 | 691 | Gene3D | - | 60 | 338 | IPR014718 | GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1971 | Cco-Chr4:33967151 | Cco11g1523 | Cco-Chr11:28077628 | 1.70E-198 | dispersed | |
Cco11g1522 | Cco-Chr11:28070757 | Cco11g1523 | Cco-Chr11:28077628 | 6.10E-265 | tandem | |
Cco11g1523 | Cco-Chr11:28077628 | Cco11g1524 | Cco-Chr11:28093468 | 9.90E-261 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1523 | K18195 | - | csv:101203789 | 1177.54 |