Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1523 ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTTTCTTTTACTTTTACGCGCCCTCCATTTCTGCAACAACAACAATACCACCTCCTCGCCAGTTTTCTTCTTCATGGCCGCCGAACGCTGCCTCGCCGGCCGCCGCCGCACCTCCTCCGCTGCAACTACGGATTCACGACCAACATGTTGTGATGGACAATGGCATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAATACAAAGGGATTGAAAACTTGCTTGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGAGCTCATTCCCTTGAATATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGGGTTCACGGGTGGACATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCCTGCTTCTGAGGATTTTCTCAAATCCAATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCCACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGGTACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAATTAAGTTCCAACTTGACAGTCCGGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCGGGCAGTGAGCTTGTGGTGGGCAACAATACAATTCTTCTTACACAAGCAAGTAGCAACAGTCCTTTTGTAGGGATCATGTATGATTATATTCGTCTAGAAGGACCCTTAACATCCAAAATGTAA 2076 44.89 MKNSKFFPSILFCLFSSFFFYFYAPSISATTTIPPPRQFSSSWPPNAASPAAAAPPPLQLRIHDQHVVMDNGIIGVNLSNPMGMVIGIQYKGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRELIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLLDPIEPEFKGEVDDKYQYGCESKDARVHGWTSTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFPASEDFLKSNQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALPPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVVGNNTILLTQASSNSPFVGIMYDYIRLEGPLTSKM 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28077628 28087022 - CcPI632755_11g015230.1 Cco11g1523 192759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1523 691 Pfam Polysaccharide lyase family 4, domain III 495 683 IPR029411 -
Cco11g1523 691 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cco11g1523 691 Gene3D - 493 684 - -
Cco11g1523 691 Gene3D - 383 483 - -
Cco11g1523 691 FunFam Rhamnogalacturonate lyase B 383 482 - -
Cco11g1523 691 SUPERFAMILY Galactose-binding domain-like 492 684 IPR008979 -
Cco11g1523 691 SUPERFAMILY Galactose mutarotase-like 67 346 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cco11g1523 691 CDD RGL4_N 60 346 - -
Cco11g1523 691 SUPERFAMILY Starch-binding domain-like 383 483 IPR013784 GO:0030246(InterPro)
Cco11g1523 691 CDD RGL4_C 497 684 - -
Cco11g1523 691 CDD RGL4_M 386 485 IPR029413 -
Cco11g1523 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 686 IPR051850 -
Cco11g1523 691 Pfam Rhamnogalacturonate lyase family 51 255 IPR010325 -
Cco11g1523 691 Gene3D - 60 338 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1971 Cco-Chr4:33967151 Cco11g1523 Cco-Chr11:28077628 1.70E-198 dispersed
Cco11g1522 Cco-Chr11:28070757 Cco11g1523 Cco-Chr11:28077628 6.10E-265 tandem
Cco11g1523 Cco-Chr11:28077628 Cco11g1524 Cco-Chr11:28093468 9.90E-261 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1523 K18195 - csv:101203789 1177.54