Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1524 ATGTCATCCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGATGGAATTATCACTGGCGTACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGAGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTCCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGACGGCAGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGTAAGGGATATCAATTCTGGACTAGGGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCGACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGACCACAAGAATATGTATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGCGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA 1908 44.34 MSSRSGVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMTAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGDYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28093468 28100337 - CcPI632755_11g015240.1 Cco11g1524 192760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1524 635 Gene3D - 8 305 IPR014718 GO:0030246(InterPro)
Cco11g1524 635 CDD RGL4_C 443 630 - -
Cco11g1524 635 SUPERFAMILY Galactose mutarotase-like 13 297 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cco11g1524 635 CDD RGL4_N 15 294 - -
Cco11g1524 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 633 IPR051850 -
Cco11g1524 635 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cco11g1524 635 Gene3D - 439 630 - -
Cco11g1524 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cco11g1524 635 Gene3D - 331 424 - -
Cco11g1524 635 CDD RGL4_M 332 431 IPR029413 -
Cco11g1524 635 SUPERFAMILY Starch-binding domain-like 332 424 IPR013784 GO:0030246(InterPro)
Cco11g1524 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cco11g1524 635 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Cco11g1524 635 Pfam Rhamnogalacturonate lyase family 3 201 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1583 Cco-Chr4:31210125 Cco11g1524 Cco-Chr11:28093468 1.10E-224 dispersed
Cco08g1308 Cco-Chr8:24900713 Cco11g1524 Cco-Chr11:28093468 5.90E-284 dispersed
Cco10g0780 Cco-Chr10:13584097 Cco11g1524 Cco-Chr11:28093468 8.00E-231 dispersed
Cco11g1522 Cco-Chr11:28070757 Cco11g1524 Cco-Chr11:28093468 2.30E-272 dispersed
Cco11g1523 Cco-Chr11:28077628 Cco11g1524 Cco-Chr11:28093468 9.90E-261 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1524 K18195 - csv:101203947 1269.6