Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1524 | ATGTCATCCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGATGGAATTATCACTGGCGTACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGAGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTCCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGACGGCAGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGTAAGGGATATCAATTCTGGACTAGGGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCGACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGACCACAAGAATATGTATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGCGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA | 1908 | 44.34 | MSSRSGVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMTAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGDYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28093468 | 28100337 | - | CcPI632755_11g015240.1 | Cco11g1524 | 192760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1524 | 635 | Gene3D | - | 8 | 305 | IPR014718 | GO:0030246(InterPro) | |
Cco11g1524 | 635 | CDD | RGL4_C | 443 | 630 | - | - | |
Cco11g1524 | 635 | SUPERFAMILY | Galactose mutarotase-like | 13 | 297 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cco11g1524 | 635 | CDD | RGL4_N | 15 | 294 | - | - | |
Cco11g1524 | 635 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 633 | IPR051850 | - | |
Cco11g1524 | 635 | FunFam | Rhamnogalacturonate lyase B | 329 | 428 | - | - | |
Cco11g1524 | 635 | Gene3D | - | 439 | 630 | - | - | |
Cco11g1524 | 635 | SUPERFAMILY | Galactose-binding domain-like | 438 | 630 | IPR008979 | - | |
Cco11g1524 | 635 | Gene3D | - | 331 | 424 | - | - | |
Cco11g1524 | 635 | CDD | RGL4_M | 332 | 431 | IPR029413 | - | |
Cco11g1524 | 635 | SUPERFAMILY | Starch-binding domain-like | 332 | 424 | IPR013784 | GO:0030246(InterPro) | |
Cco11g1524 | 635 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 629 | IPR029411 | - | |
Cco11g1524 | 635 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 426 | IPR029413 | - | |
Cco11g1524 | 635 | Pfam | Rhamnogalacturonate lyase family | 3 | 201 | IPR010325 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1583 | Cco-Chr4:31210125 | Cco11g1524 | Cco-Chr11:28093468 | 1.10E-224 | dispersed | |
Cco08g1308 | Cco-Chr8:24900713 | Cco11g1524 | Cco-Chr11:28093468 | 5.90E-284 | dispersed | |
Cco10g0780 | Cco-Chr10:13584097 | Cco11g1524 | Cco-Chr11:28093468 | 8.00E-231 | dispersed | |
Cco11g1522 | Cco-Chr11:28070757 | Cco11g1524 | Cco-Chr11:28093468 | 2.30E-272 | dispersed | |
Cco11g1523 | Cco-Chr11:28077628 | Cco11g1524 | Cco-Chr11:28093468 | 9.90E-261 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1524 | K18195 | - | csv:101203947 | 1269.6 |