Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1533 ATGTTGGAATATTCGCATATGATGACGCTTGTGAGAGAAGACGACGAAGCCACTGGTCCACAACCAACAACTGCTCCGACAAGTTTGGTTAAGGCGATTGGCTCAAACGTGTCAAAGCAATTTGCTACCAATACACGACTCTCTTCGCTTCCTCCTCCACTTAGAGCCTTTTCGCGACCTTCTTCTTCTTCTGTTGTTTGCTCTTCTTCTCGCTTTTCAGATATGGACGCTTCAGGGGGTGTAAGTTTGTATCCTTTGCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGGGTTTCATAATGTGGCAGGAGAGAAGGACGTGAATGAATATCTATCTTTTGATTACTTTGATGCTCAACTTACCTCTTTAGGATGGAAACAGGTTGGCAATCTGCGGAAACATGTACAAGCATGTGGACTTTCTAAGAGAATTGAGTTAGTTATCACTTCCCCATTGTTCAGGACCATGGAAACCGCGGTTGGAACATTCGGTGGTGAAGGTTATTCGGATGGTACAAATGTTCCTCCATTAATGGTAGCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTGTGGCTGTAGAGCTTTGTCGGGAACATTTGGGCGTTCATCCTTGTGACAAGAGGCGAAGTATTAGTGAGTATCGGTCTCTTTTCCCTGCGATTGATTTTTCAATGATTGAACATGATGAAGATACCCTGTGGAAGCCAGACATCAGAGAGACCAACGATGAAGTAGCAGAGAGGGGACTGAAGTTTCTTAAATGGCTCTGGACCCGGAAGGAAAAGGAGATCGCAGTTGTCAGCCACAGTGGATTCTTATTTCATGCGTTGAGTGCATTTGGAAATGACTGTCGTCCGTTTATAAAGGATGAAATCTGCAAACATTTTGCCAATTGTGAGCTTCGTTCCTTCGTTCTTGTTGACAGGAGCATGATCGGGTCAGAATCCTCAACGACCAATTTCCCGGGCGGATTACCAAAAGGGATTGATCTTCCCAGTGATGTTGCAGCTGAAAAGCATCCGGAGAAGGGAGTTCCAAATGAAGACGTAGCTTGA 1089 45.18 MLEYSHMMTLVREDDEATGPQPTTAPTSLVKAIGSNVSKQFATNTRLSSLPPPLRAFSRPSSSSVVCSSSRFSDMDASGGVSLYPLHRTKTIHLVRHAQGFHNVAGEKDVNEYLSFDYFDAQLTSLGWKQVGNLRKHVQACGLSKRIELVITSPLFRTMETAVGTFGGEGYSDGTNVPPLMVANAGDCNRPAISSLNCPPFVAVELCREHLGVHPCDKRRSISEYRSLFPAIDFSMIEHDEDTLWKPDIRETNDEVAERGLKFLKWLWTRKEKEIAVVSHSGFLFHALSAFGNDCRPFIKDEICKHFANCELRSFVLVDRSMIGSESSTTNFPGGLPKGIDLPSDVAAEKHPEKGVPNEDVA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28188102 28193028 - CcPI632755_11g015330.1 Cco11g1533 192769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1533 362 CDD HP_PGM_like 91 162 IPR013078 -
Cco11g1533 362 SMART PGAM_5 91 287 IPR013078 -
Cco11g1533 362 MobiDBLite consensus disorder prediction 344 362 - -
Cco11g1533 362 MobiDBLite consensus disorder prediction 326 362 - -
Cco11g1533 362 FunFam Phosphoglycerate mutase-like protein 1 86 333 - -
Cco11g1533 362 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 86 318 IPR050275 GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cco11g1533 362 SUPERFAMILY Phosphoglycerate mutase-like 89 320 IPR029033 -
Cco11g1533 362 Gene3D - 89 336 IPR029033 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1533 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0952 Cco-Chr10:20726580 Cco11g1533 Cco-Chr11:28188102 4.60E-120 dispersed
Cco11g1532 Cco-Chr11:28177492 Cco11g1533 Cco-Chr11:28188102 2.90E-114 tandem
Cco11g1533 Cco-Chr11:28188102 Cco11g1534 Cco-Chr11:28196020 5.90E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113