Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1535 ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACCATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCAAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGGCAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTGGCCGATGCAATTGAGTACGTGAAGGAACTAATGGAGAAAATTAAGAAGTTGGAGAGGGAAATTGAAGTGAATAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGAAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 999 41.14 MELNENYLLEEVLGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHHLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERREDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28224385 28227164 + CcPI632755_11g015350.1 Cco11g1535 192771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1535 332 Coils Coil 196 223 - -
Cco11g1535 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Cco11g1535 332 Pfam Plant bHLH transcription factor, ACT-like domain 250 321 IPR054502 -
Cco11g1535 332 Gene3D - 152 224 IPR036638 GO:0046983(InterPro)
Cco11g1535 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 327 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco11g1535 332 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
Cco11g1535 332 Pfam Helix-loop-helix DNA-binding domain 164 206 IPR011598 GO:0046983(InterPro)
Cco11g1535 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 225 IPR036638 GO:0046983(InterPro)
Cco11g1535 332 Coils Coil 95 115 - -
Cco11g1535 332 CDD ACT_UUR-ACR-like 258 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1458 Cco-Chr5:17366415 Cco11g1535 Cco-Chr11:28224385 5.50E-33 dispersed
Cco02g0443 Cco-Chr2:3993208 Cco11g1535 Cco-Chr11:28224385 4.20E-16 transposed
Cco03g0399 Cco-Chr3:4345649 Cco11g1535 Cco-Chr11:28224385 2.90E-32 transposed
Cco11g1535 Cco-Chr11:28224385 Cco04g1576 Cco-Chr4:31146122 2.00E-70 wgd
Cco11g1535 Cco-Chr11:28224385 Cco08g1344 Cco-Chr8:25321866 1.70E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60290 PF00010 HLH 5.80E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1535 - - - 0.0